BAC Information

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BAC

Clone NameMSMg01-342A19
Chromosome13 (Build37)
Map Location 112,537,858 - 112,712,615
singlet/doubletdoublet
Overlap geneMap3k1, LOC668181
Upstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3
Downstream geneLOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342A19.T7 (MSMg01no342_a19.b1)MSMg01-342A19.TJ (MSMg01no342_a19.g1)
ACCAG455694AG455695
length738738
length of high quality
(start - end)		404 (60 - 463)421 (67 - 487)
definitionCHROMAT_FILE: MSMg01no342_a19.b1 PHD_FILE: MSMg01no342_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:28 2005CHROMAT_FILE: MSMg01no342_a19.g1 PHD_FILE: MSMg01no342_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,537,858 - 112,538,258)(112,712,195 - 112,712,615)
sequence
TGTGGCGCTAAACGACTCCTATTTTCAGAAGAGCGCGGAATTCAACTTGA
TGCCAGAACAAATAGCTGTGCAAATGCCAGGAATTCGTGTGTAAATGAAA
CTCAACCTCACTTTTCTTTCTGAGCAGTTTCTAAATGCAGAGCAAATTTA
GTATTTGTTTAAAAACACTACTGATCGATCGGTAGATGAGTGAGTTTATC
AGCCCAGTCTCGTATAAAGATATCGTGCACGGCAGAAGGAAAACAGTAGT
TATGTAATGATCAGCGGGGTGAGTGATGGGTCGTGACAGAGAGGAAGATT
TCAATGGTGTTTTCTGCCTATAGGCTAGCAAAATAATATGAAATAATTCA
CCCAACCTTCAGGCAATCTTGCCCTGCCTTGTAAGCTGCATCCGAGAACA
GCAGACTCCTAAGTGAGTTTCTGCTTAACCCGCACAGTGAGGGCAGAGAC
TGAGTCGATGAGAGAAGAAAGCAGAGCTCTTGCGATAGACACAGACTTAT
TGAACTACTTCCCACCCACTTCTATTTCTTTTTTTCCGGGTTGAAAAGAT
AACCTTTCCCCTGAAATTCACACCGAAGGAAGGGGAGGGGAAAAAATCAA
CCCTATTTTCTCAAAAAACCCAAGTGATGGGCCCACCCGTTATTTCCCCC
TTGTCCCCCATTACCCGCGCCCTATATAGGGGGGGGGGCTATTTTTGTCT
CTTCAAAACAATTTTTTTTTTTCTCCTTTGTATCCTCG

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTTGGTGAGGTTTCCAGACGATACTAAGCTTTA
AAAAGCAACCGTAGGCAATTTGTTCTCTGGTCTTCTTGTGGTCTGCTCAT
CCTTTGTAGGGCTACTTAAGCCCTGCAGTTCCTGTGAGATACTCCTGCCT
TTGATTTTCTAGAACCTTATTTATGCATCATTCACTCAGATGCTATTCAC
AGAGCAAGTCACAGAGACCTGTCTGCTTCTGACACGCACACAGTGCTTCC
CTAACCAGGCCCTAAGATCATTGTCTAACTTAGGGTTTCTATTGCTGTGA
TAAAGCACCATGACCAAAAAGTAAGTAGTGAAGGAAAAGGTTTCTTTGGC
TTACTCTTCCAGATCACTCACCATCATTGAAGGGTGTCAGGATAGGACAG
GATCCAGGTCAGGATCCTGGAGGCAGGAGCTGTTACAAGAGGCCATGAAG
GAATGGTGCTTACTGGCTGGCTTCCCCTGGGTTTCTCACCCTCCTTTCTT
ATAGAACTTATAACCACCAATCCCCAATGGGGTTAAACCTTCCCGGCCAG
CCCTAATTAAAAAATGGCTTACAGCTGCGCCTTATTCCATTAAGGGTCCC
CCCTTTCAGAAAAACACAAATTTGTGGGGCAAGGTGGCTTATAACCCCCC
CTTTACCCAAAGCAAAAACTTTTTTGTTTTTTTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_a19.b1 MSMg01no342_a19.b1 CHROMAT_FILE:
MSMg01no342_a19.b1 PHD_FILE: MSMg01no342_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:28 2005
         (404 letters)



>mm_chr13_112537658_112538461
          Length = 804

 Score =  737 bits (381), Expect = 0.0
 Identities = 396/401 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatagctgtgcaaatgccaggaattcgtgtgtaaatgaaactcaacctcacttttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatagctgtgcaaatgccaggaattcgtgtgtaaatgaaactcaacctcacttttcttt 260

                                                                       
Query: 61  ctgagcagtttctaaatgcagagcaaatttagtatttgtttaaaaacactactgatcgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 ctgagcagtttctaaatgcagagcaaatttagtatttgtttaaaaacgctactgatcgat 320

                                                                       
Query: 121 cggtagatgagtgagtttatcagcccagtctcgtataaagatatcgtgcacggcagaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cggtagatgagtgagtttatcagcccagtctcgtataaagatatcgtgcacggcagaagg 380

                                                                       
Query: 181 aaaacagtagttatgtaatgatcagcggggtgagtgatgggtcgtgacagagaggaagat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 aaaacagtagttatgtaatgatcagcggggtgagtgatgggtcgtgacagagagaaagat 440

                                                                       
Query: 241 ttcaatggtgttttctgcctataggctagcaaaataatatgaaataattcacccaacctt 300
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcaatggtgtgaactgcctataggctagcaaaataatatgaaataattcacccaacctt 500

                                                                       
Query: 301 caggcaatcttgccctgccttgtaagctgcatccgagaacagcagactcctaagtgagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggcaatcttgccctgccttgtaagctgcatccgagaacagcagactcctaagtgagtt 560

                                                    
Query: 361 tctgcttaacccgcacagtgagggcagagactgagtcgatg 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgcttaacccgcacagtgagggcagagactgagtcgatg 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no342_a19.g1 MSMg01no342_a19.g1 CHROMAT_FILE:
MSMg01no342_a19.g1 PHD_FILE: MSMg01no342_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:28 2005
         (421 letters)



>mm_chr13_112712161_112712981
          Length = 821

 Score =  706 bits (365), Expect = 0.0
 Identities = 407/421 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttggtgaggtttccagacgatactaagctttaaaaagcaaccgtaggcaatttgttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 455 atttggtgaggtttccagacgatactaagctttaaaaagcaaccgtaggcaatttgttcc 396

                                                                       
Query: 61  ctggtcttcttgtggtctgctcatcctttgtagggctacttaagccctgcagttcctgtg 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 395 ctggtcttcttgtggtctgctcatcctttatagggctacttaagccctgcagttcctgtg 336

                                                                       
Query: 121 agatactcctgcctttgattttctagaaccttatttatgcatcattcactcagatgctat 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 agatgctcctgcctttgattttctagaaccttatttatgcatcattcactcagatgctat 276

                                                                       
Query: 181 tcacagagcaagtcacagagacctgtctgcttctgacacgcacacagtgcttccctaacc 240
           ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 275 tcacagagcaagtcacagagacctgtctgcttctgacacacacacagtgcctccctaacc 216

                                                                       
Query: 241 aggccctaagatcattgtctaacttagggtttctattgctgtgataaagcaccatgacca 300
           |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 aggcccgaaggtcattgtctaacttagggtttctattgctgtgataaagcaccatgacca 156

                                                                       
Query: 301 aaaagtaagtagtgaaggaaaaggtttctttggcttactcttccagatcactcaccatca 360
           |||||||||||| |||| |||||||||||||||||||||||||||||||||||  |||||
Sbjct: 155 aaaagtaagtagggaagtaaaaggtttctttggcttactcttccagatcactcgtcatca 96

                                                                       
Query: 361 ttgaagggtgtcaggataggacaggatccaggtcaggatcctggaggcaggagctgttac 420
           ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||
Sbjct: 95  ttgaagggtgtcaggataggacagggtccacgtcaggatcctggaggcaggagctggtac 36

            
Query: 421 a 421
           |
Sbjct: 35  a 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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