Query= MSMg01no342_i06.b1 MSMg01no342_i06.b1 CHROMAT_FILE:
MSMg01no342_i06.b1 PHD_FILE: MSMg01no342_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:03 2005
(449 letters)
>mm_chr13_21133406_21134254
Length = 849
Score = 793 bits (410), Expect = 0.0
Identities = 436/448 (97%), Gaps = 6/448 (1%)
Strand = Plus / Plus
Query: 4 ggaattctcctgtttacataagcccatgggtaaagatattaacaagcatctatttaccta 63
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcctggatagataagcccatgggtaaagatattaacaagcatctatttaccta 263
Query: 64 gaccaaaagagcattttgttgttgcatacaagatgcatttgggctaagtgaatggctcat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaccaaaagagcattttgttgttgcatacaagatgcatttgggctaagtgaatggctcat 323
Query: 124 ttctcgcttaccatctaagtgtgagagtctgagcccagatctctagtgcccacccataaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttctcgcttaccatctaagtgtgagagtctgagcccagatctctagtgcccacccataaa 383
Query: 184 tctaggcattgcagtacatatctataaccctagagctgctgggacaggaacaggggatcc 243
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctaggcattgcagcacatatctataaccctagagctgctgggacaggaacaggggatcc 443
Query: 244 cagcaaattattggccagataatatggccagtatacacacacacacacacacacacacac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagcaaattattggccagataatatggccagtatacacacacacacacacacacacacac 503
Query: 304 ------gcacatgcacacgcacacgtgcgcgcgtttaaggccagccttggttacatagtg 357
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 504 acacacgcacacgcacacgcacacgcgcgcgcgtttaaggccagccttggttacatagtg 563
Query: 358 aacttgagacacatctggaatctataacatcctatcttgaagtgtcagtaggggttgggg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aacttgagacacatctggaatctataacatcctatcttgaagtgtcagtaggggttgggg 623
Query: 418 ggcacataccgttttaatcccagctctc 445
||||||||||||||||||||||||||||
Sbjct: 624 ggcacataccgttttaatcccagctctc 651
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_i06.g1 MSMg01no342_i06.g1 CHROMAT_FILE:
MSMg01no342_i06.g1 PHD_FILE: MSMg01no342_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:03 2005
(406 letters)
>mm_chr13_21288920_21289731
Length = 812
Score = 735 bits (380), Expect = 0.0
Identities = 402/412 (97%), Gaps = 6/412 (1%)
Strand = Plus / Minus
Query: 1 tttctcccctaagttgcttttgtca-----gttttt-tttttgtttttgtttttaaccac 54
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 612 tttctcccctaagttgcttttgtcagttttgtttttgtttttgtttttgtttttaaccac 553
Query: 55 agaaactgtaagttaaactaaagcaggacaatattgtcactgtgttcacacaccttgaat 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 agaaactgtaagttaaactaaagcaggacaatattgtcactgtgttcacacaccttgaat 493
Query: 115 ctaacccagtagagtcaatttctcagcaatagtcccaccagtttgtgatttctcattatt 174
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 492 ctaacccagtagagtcaatttctcagcaatagttccaccagtttgtgatttctcattatt 433
Query: 175 tttcagagacctcatacaggaggaaaaggagggataggccaaggacgagagttcagtaac 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tttcagagacctcatacaggaggaaaaggagggataggccaaggacgagagttcagtaac 373
Query: 235 acaatcacagcagtttattcctggactgagctgtggatatcagtctcatggcctcaagaa 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 acaatcacagcagtttattcctggactgagctgtggatatcagtctcatggcctcaagaa 313
Query: 295 aaagagtacaatagtctatgttttagctcagtgatgaggccttgctttgcatgattacaa 354
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aaagagtacaatagtctatgttttagctcagtgatgaggccttgctttgcatgattacag 253
Query: 355 ttctggggttggtagagtatagtaggagagtggaagggtacaggaaggatat 406
|||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 252 ttctggggttggtagagtatagtaggagggtggaagggtacagaaaggatat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 812
Length adjustment: 9
Effective length of query: 397
Effective length of database: 803
Effective search space: 318791
Effective search space used: 318791
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
