BAC Information

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BAC

Clone NameMSMg01-342J17
Chromosome13 (Build37)
Map Location 33,950,395 - 33,950,823
singlet/doubletsinglet
Overlap genenone
Upstream geneSerpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720
Downstream geneSerpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342J17.T7 (MSMg01no342_j17.b1)MSMg01-342J17.TJ (MSMg01no342_j17.g1)
ACCAG456118AG456119
length733743
length of high quality
(start - end)		447 (58 - 504)455 (62 - 516)
definitionCHROMAT_FILE: MSMg01no342_j17.b1 PHD_FILE: MSMg01no342_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:10 2005CHROMAT_FILE: MSMg01no342_j17.g1 PHD_FILE: MSMg01no342_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCGCTAAACGACTCACTATTGCGAGAGAATGCGCGGAATTCTCTGTTT
ACCTCTGGACTCCATTTTTAATAGGGTTATCTGTTTCTCTGGAGTCAAAC
TTCTTGAGTTCTTTTTTGAGTTCTAGGGCTATTTTGGATATTAGCCCTCT
GTCGAATGTAAGGTTGGTAAACATCTTTTCCCAATCTATGACTTTTTGTC
CTACTGATAATGTCCTTTGACTCACAGAAGATTTTCTACTTTATGAGGTC
CCATTTTTCGATTGTTGATCTTAGAGCATAAGCCATCGGTGTTCTGTTCA
GAATTTTTTCTCTTGTGCCCATGTGTTCAAGGCTCTTCACCACTTTCTCT
TCTATTAGTTTCAGTGTATCTGATTTTATGTGGCAGTCCTTAACCCACTT
AGACTTGAGCTTTGCACAAAAAGGTAAGAATGGATCATTCTTCTACATGC
AGACTCCCAGTTGAACCAGCCCAATTTGTTGAAAATGCTGTATTTTTTCC
ACTGGATGATTTTATCTCTTTGTCAAAGATCAAGTGACCCTAGGTATGTG
GGTTCATTTCTGGGGCCTTCAGTCTATTCCATTGAGTTACTTTGTGGGGT
TCCGTACCATTCCCCCGCGCTCTTTTTATCCCCCTTTTTTATTTGTGTTT
CCGCCCGCGTCCGCCCTTTCCTTATTTTTTTTTATCCACACAAATAATAT
CACTTTCCCCCCCTCCTTTCGTTTATCCTCTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCAGCTCATGGGTCTTTGGACCAGGCCATGCTAGCCTC
ACTCTGTTCCCTACCCTGGTGCTTCTACCTGGTCATAGAGTCTTAATATG
TGACCCCATTTCCCTGCCATTCATCACTCCAGTAAAATCGACTCACACTT
GTGACTTCTCACTCTCCTGGAAAACCAAATTACTGTCTGCCAAACTGACC
ACAATCCACCTCTATTTGAAGTCTGCTGTACTCAACTCTTGCCACCCACT
TCTGTTCAACAGGGAATCTTCATGGCCCCAAACCACTCAGGTCCTTAGGT
CCTTTTATAGCATTAGCCCTTCTTCTTTGTTTTTAATAACCCATTCCTCA
ACCTGTCAGGCCTCTTTGGCCTCTCTTAGCTGCTGGCTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCCTTCCTC
CTTCCTCCTCTTCTCTCTCTCTCTCCTTTCTCTCTTTTTCCCTTTTTTTC
TNTNTCCTCTTTTTTTTTTTCCTTTTCTTTTTTTTCTNTTTCTTTTTTCC
TTTTTCCTCNCCCCCCCTTCTTTTTTTTTCCCCCTTTTCTTTCTCCTTTT
TTCCCTTCTCCCTTTCTTTTTTTTTCCCTCCCCTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_j17.g1 MSMg01no342_j17.g1 CHROMAT_FILE:
MSMg01no342_j17.g1 PHD_FILE: MSMg01no342_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:10 2005
         (455 letters)



>mm_chr13_33950249_33951102
          Length = 854

 Score =  803 bits (415), Expect = 0.0
 Identities = 427/431 (99%), Gaps = 2/431 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagctcatgggtctttggaccaggccatgctagcctcactctgttccctaccctggtg 60
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 575 ttcagctcatgggtctttggaccaggccatgctagccttgctctgttccctaccctggtg 516

                                                                       
Query: 61  cttctacctggtcatagagtcttaatatgtgaccccatttccctgccattcatcactcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cttctacctggtcatagagtcttaatatgtgaccccatttccctgccattcatcactcca 456

                                                                       
Query: 121 gtaaaatcgactcacacttgtgacttctcactctcctggaaaaccaaattactgtctgcc 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gt-aaatcgactcacacttgtgacttctcactctcctggaaaaccaaattactgtctgcc 397

                                                                       
Query: 181 aaactgaccacaatccacctctatttgaagtctgctgtactcaactcttgccacccactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aaactgaccacaatccacctctatttgaagtctgctgtactcaactcttgccacccactt 337

                                                                       
Query: 241 ctgttcaacagggaatcttcatggccccaaaccactcaggtccttaggtccttttatagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctgttcaacagggaatcttcatggccccaaaccactcaggtccttaggtccttttatagc 277

                                                                       
Query: 301 attagcccttcttctttgtttttaataacccattcctcaacctgtcaggcctctttggcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 attagcccttcttctttgtttttaataacccattcctcaacctgtcaggcctctttggcc 217

                                                                       
Query: 361 tctcttagctgctggctccttccttccttccttccttccttccttccttccttccttcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 tctcttagctgctggctccttccttccttccttccttccttccttccttccttccttcct 157

                      
Query: 421 tccttccttcc 431
           ||| |||||||
Sbjct: 156 tcc-tccttcc 147


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 854
Length adjustment: 10
Effective length of query: 445
Effective length of database: 844
Effective search space:   375580
Effective search space used:   375580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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