BAC Information

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BAC

Clone NameMSMg01-343M04
Chromosome13 (Build37)
Map Location 72,948,098 - 72,948,339
singlet/doubletsinglet
Overlap genenone
Upstream geneIrx1, LOC100042828, LOC100042832, LOC100042836, Irx2
Downstream geneLOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19, Slc12a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343M04.T7 (MSMg01no343_m04.b1)MSMg01-343M04.TJ (MSMg01no343_m04.g1)
ACCAG456990AG456991
length816769
length of high quality
(start - end)
242 (71 - 312)437 (67 - 503)
definitionCHROMAT_FILE: MSMg01no343_m04.b1 PHD_FILE: MSMg01no343_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:43 2005CHROMAT_FILE: MSMg01no343_m04.g1 PHD_FILE: MSMg01no343_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCGCGGAATT
CATTCAGCTCACTTCAAGAGCATCCAGAAAATTCCAGAAAGTACACTTGG
CCAAAAATACCACTGATTTTTCTTTGTAAAAGTGCTCCTTGGGCTGTTAT
CCCTGGCTTACCTTGAGCTGTCATCTTAGTGAGTGGTCCAGCCTCACCTT
CTGGATTCTTTGCTCTCTGCTGGCCCATGACTGACCAGTGTAGGAGAGAC
ACTCAGGTCTGTGAGAGGTTCAGGATATAGTCTCAGTCCTGACCCTTGCA
GGTCATGGCTTGATTTTAGTGTTTGGACCCAGCCCTGATACATTCTTTCC
AGATTAGTTTCATCTTCTGGATACCCAGTGTGTCTGCATGATCTACTTTC
CTTGACCTTTATTTATCTTTTTTACCCTTTCCTCCCTTCTTTTTTTCCTC
GTTCCCTAATTTTTTTACTGCTTTTTCCCCCCTGTCTTCTTTTTTTTTTT
TACACCCTTTATTTCCCTCTTTTTTGCAAACCCATCTTGCTATTATTCCT
TATTTACACTTATTTCTATTCCCTTTTAAACTTTTCCATAATTTTTCCCC
TTCTTTTTTACCTTTTTTCTAACCCCTCCACCCTAACTTTTTTACTCTCT
TCCTTTTTTTTTTTTCTCCCCTCTCAAATCTATTCATTCNTATTTATCTC
CTTTCATTGATACCTCTGCTCTTTTTCTGCTCTCGCCATATTTGTCTCCT
ATTTCCCTTTATATTTTTCATACTTTTCCTCACTTATTTTTTCTCTATTT
CTTCTTCTCCCCTCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAGATGAGAGAGTTTCAGCCTGCAGCCTGACTGC
CTTTTCCTGTTCATATCTGTTTGTACAGTGAAAAAGAGAAAATGACTTGG
GCAGAGAGATGTAAAAATGCACTTTGTCGTGTAGGAGAAGAGCTTGAGCA
AGTCACTTTCTAGCTAATGCCTTGATAAACGTGAGGTGTACTTGTTACAG
AAAACTATTCTTTTACATACTAAGGCAATAGGAAATATGTCCAGAGACAA
GGGCCCATCCATTAATGGATCTAGTTGGTGAAAATGTGAACTTATTTGAA
AGGAGAGAGCCTGGACTGAGAATGCAGATCTTCCTTAGTGACCATGATCT
AGAATAGTCACAGGAGCTAACTAAACTGTGCTCCAAGGGGACCAAGTTCC
ATCCAGAGCTTGCAAGAAAATTTTGCAACATTGCCCTATAGAACTGGTTT
TATAGTCCTAAAAGAATAGGGGCATAATGGAGTCTTTCACCTTGTCTCAA
GAAAGCCACTGAAGCTCAGGCAAATATATTACAGCTAATTGATTCTCTCA
TGCGATCCCCTGGGGTCGTCACGTGGTGATTCCTGCTGTTACGGCACAAT
ATTAACGGTCTCCTTATCCTCGGTTTGTCTCTATTTACTGTCTTTTCTTT
CCTGGTTTTAAACCTTCTTGCATCTCTTATATCTCTCTTGCTGTTCATCC
TTCATTCTATCAGCATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_m04.b1 MSMg01no343_m04.b1 CHROMAT_FILE:
MSMg01no343_m04.b1 PHD_FILE: MSMg01no343_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:43 2005
         (242 letters)



>mm_chr13_72947898_72948539
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catccagaaaattccagaaagtacacttggccaaaaataccactgatttttctttgtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catccagaaaattccagaaagtacacttggccaaaaataccactgatttttctttgtaaa 260

                                                                       
Query: 61  agtgctccttgggctgttatccctggcttaccttgagctgtcatcttagtgagtggtcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgctccttgggctgttatccctggcttaccttgagctgtcatcttagtgagtggtcca 320

                                                                       
Query: 121 gcctcaccttctggattctttgctctctgctggcccatgactgaccagtgtaggagagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctcaccttctggattctttgctctctgctggcccatgactgaccagtgtaggagagac 380

                                                                       
Query: 181 actcaggtctgtgagaggttcaggatatagtctcagtcctgacccttgcaggtcatggct 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 actcaggtctgtgagaggttcaggatagagtctcagtcctgacccttgcaggtcatggct 440

             
Query: 241 tg 242
           ||
Sbjct: 441 tg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)