BAC Information

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BAC

Clone NameMSMg01-344P10
Chromosome13 (Build37)
Map Location 49,925,351 - 49,925,878
singlet/doubletsinglet
Overlap genenone
Upstream genePhf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272
Downstream geneEG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344P10.T7 (MSMg01no344_p10.b1)MSMg01-344P10.TJ (MSMg01no344_p10.g1)
ACCAG457900AG457901
length750769
length of high quality
(start - end)
528 (76 - 603)44 (96 - 139)
definitionCHROMAT_FILE: MSMg01no344_p10.b1 PHD_FILE: MSMg01no344_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:18 2005CHROMAT_FILE: MSMg01no344_p10.g1 PHD_FILE: MSMg01no344_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:19 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCTTCATCTTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCGGGATTCCTCTGCCCTGTAGTCTCAGATCTGCTGGCCT
CATGTCTCACTGGTCAGGAGTCTACCTCTGCACTCAGGTTGCTGGTCGGA
GTGAGTGGGAGAAGTGACCCACTTAGTACAGTGCTGCCTCCTCCAGCACT
GGGAGTCGTGCAATGGAACAGCCTGCCAGCCACGTGCCAAGCCTTTGACT
GGAAGTTGGTATCTTGAAAGTAAAGCACGGCTGCTCCACAAACCCAACTC
AGTTGTATCCATAATGTTGATGGAAATGGGAAGATCATACAGAGAAGAAG
GATGCCTCTTAAGACACTCTGAGGACATGGCTCTGCTTTCTGCCTTTATA
CCATGTGATGCCCTCATGCACACAAGCCAAAGAACAGCTCTCAGAGGGAA
GCAGCCACACCTCTCAGCTTCCCTTCTGCTCTCTCCTGGCATCTCCTGGG
CCTTTGTCTCCCAGGTCATCCCAGCTCTCCCAGTCTCAGCTTCAGCATCT
TTGGATCTAGTCCAAGATCTCTGATGTATTCCATCAGCCCTATGCCTGAC
CAGCTTGTCTGACAGATCTTCCATATTCCTGAGCAGACTTCTGTGGGCCT
GAAGGAGAGATTACTTGTATATTCTTTCTGTGATTCCTCATCTTGATTTG
ATTCCTTATACATCCAAGGTGATTTCAGACGTTCCTCTAACCGTGCGTCT

AGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTCCCCAGAATGCAACCAAACCACATCTCA
TTTTTTTTTTCCCCGAGACAGGCTTTCTCTGTGTAGCCCTGGCAGTCTTG
GACTTGCTTTGTAGACAAGGCTGACCTTCCAACTCACAGAGATCCATCTG
CCTCTGACTCCCCAGTGCTGGGATTAAAGACATATGCTACCATGCCTGGC
TACCACATCTCATTTTAATCCATGCGTGTTATGCCATTGTGTAACTTAGA
AACCACAATGTGAATTTCTTTACTTAGAATTATTACTTGAAATAGAAGGA
TATGCTTTCTTTTAGTAAAAATCACCTTTGTACGTAATTTGCTTCATATC
AATCCATTTGCCACCCGGTATGAATTCGCTGCAAATTCACACTCTAAAAG
TTCTTTTAGTACTTTTATAATACTTTGAACACACTTTTTTTTTTTTCTTA
TCTTAAGGATATTATCAGTGCTTGTCTATTTGTCTGAATTTTTGCCTTGG
CATACACCCCATGTTCATATTCTTTGTTTATATCTTGAAACAAACCGGTG
GTTAATTTTTTTCTCTTTAATTTTTCTCTCATTATCCCCTTCTTCTCTGT
TTGTGGGTCCATGCCCTTATTTTCCCTTTCAATTTTCTCCATTCTATTTT
CCCTCGCTCTTTCTATCATTCTTCTGTCCCTATCCTCGCTCTCTATATAA
TGTTTGCTTCTTCCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_p10.b1 MSMg01no344_p10.b1 CHROMAT_FILE:
MSMg01no344_p10.b1 PHD_FILE: MSMg01no344_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:18 2005
         (528 letters)



>mm_chr13_49925151_49926078
          Length = 928

 Score =  959 bits (496), Expect = 0.0
 Identities = 520/528 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgtagtctcagatctgctggcctcatgtctcactggtcaggagtctacctctgcactc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cctgtagtcccagatctgctggcctcatgtctcactggtcaggagtctacctctgcactc 669

                                                                       
Query: 61  aggttgctggtcggagtgagtgggagaagtgacccacttagtacagtgctgcctcctcca 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 668 aggttgctggtcggagtgagtgggagaagtgacccactcagtacagtgctgcctcctcca 609

                                                                       
Query: 121 gcactgggagtcgtgcaatggaacagcctgccagccacgtgccaagcctttgactggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gcactgggagtcgtgcaatggaacagcctgccagccacgtgccaagcctttgactggaag 549

                                                                       
Query: 181 ttggtatcttgaaagtaaagcacggctgctccacaaacccaactcagttgtatccataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttggtatcttgaaagtaaagcacggctgctccacaaacccaactcagttgtatccataat 489

                                                                       
Query: 241 gttgatggaaatgggaagatcatacagagaagaaggatgcctcttaagacactctgagga 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 488 gttgatggaaatgggaagatcatacagagaggaaggatgcctcttaagacactctgagga 429

                                                                       
Query: 301 catggctctgctttctgcctttataccatgtgatgccctcatgcacacaagccaaagaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 catggctctgctttctgcctttataccatgtgatgccctcatgcacacaagccaaagaac 369

                                                                       
Query: 361 agctctcagagggaagcagccacacctctcagcttcccttctgctctctcctggcatctc 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 368 agctctcagagggaagcagccacacctctcagcttcccttctgctttctcctgacatctc 309

                                                                       
Query: 421 ctgggcctttgtctcccaggtcatcccagctctcccagtctcagcttcagcatctttgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctgggcctttgtctcccaggtcatcccagctctcccagtctcagcttcagcatctttgga 249

                                                           
Query: 481 tctagtccaagatctctgatgtattccatcagccctatgcctgaccag 528
           |||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct: 248 tctagtccaagatctctgatgtattccaccagtcatatgcctgaccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)