NTTCTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCACGGTTGCGATTGAGGGAGTCCTTGTTTCTTGTGCT
TTCTCTTGGGCTTTTCTTCTTCTGTTTTTTTGTTGTTGTTGCTGCTTGTC
TGTTTTGGTTTCTGTCCAATATGATGTCTTAGTTTTTGTTTTTAATTTGA
AATCACACACACACACATATATATCATCATGTTATGATCTCTTGGACGCC
TGTTTCTTTTTCCTAATTAGAGAAAGGGAATGGATATAGAAGAGAGGGGA
AGTGAGCAGGAAATGGTAGGAGGATCTATAATCAGGATATATTATATGTG
TAAAATAGCTGTTTCAGTATAAGGAGGCGAAAAAAGAACTAAGGCATCTT
CTTAGTACACATTTTTCCTCCCCAACATCGCAAATGCTACTATTTCTCCT
CTATAAAGCTACACTCTGATTTTTTCCTTCCTTCCTTCCTTCCTTCCTTA
CTTCCTTCCTTCCCTTCCTTCCTTCCTTCCTTTCCTTCTTTCCCCCCTCT
CTATCTACCCCACTTTCTTCTAATTATATTAACTTTTTTCCTTACTTCCA
CCATTATCACTTCTACTTTATTATCTTCATATTCCTTTATCTAATATCCC
TTATTACGCCTTATTTTCCCATATTATTTACCTTTAATTTCACTCCTTAA
TCCTCTCCTATTTCCCATATTCACTATACTCATCCTTATCTTTTCCTCCT
ATTATTATTTCCATATTACCTAG

NNCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCTGACTAGAAGAAAAC
ATCTGTTGGTTTCTATCACATATCCTTGGTAACGGGAGACTCATACCTTT
GAGAAACTTAAGAAAAGCAATGTAACTTTTCCTTTGGAAATGTTATTAGG
CATTAATTACAAACCTTCCTGAGATTTTGTTCAGGGTTTTTAACAGGAGC
TTTTAAAATTTTGGAAAAATTATTCTTTGACAAATTCATAGGTGTGTAAA
ATACATTCAGGCCATACTTGTCTTTTATGCCTCTCTCTCTCTAGCCGCCA
GTCCTCCCTCTTTCCAAGTTCTCACCACTCTGGGAACAAAGCCCTCCTAC
TGTACAGAAAAACAAAATGGCAAATCAGTAGCTGCAGAAGTTAGTTTTAT
GCAGTCCAAAATTTAGGTAAATTTGCAAAGGGACTAGCAACATAAAAAAT
GTGATTGTTTTAAGAAAATTCTTTGTACAGAAGCAACTAGAGCCATGTGG
TAGCTTGGCTATTTTCTACCATCCTAAAATAACATATTAACTGTATCTAT
AGAAGTACTCACAAGATTATATGGAAAGATATTATCATATTTAGAGATTA
TTATTGGGGATTTCGTGCTCTTTTTCTCCGCCTCTATACGTTCTTATCAG
GTCATTTCTCCATCTTTTACTCCTTCCTCTTTAATTTCCTTTN

Query= MSMg01no345_i12.g1 MSMg01no345_i12.g1 CHROMAT_FILE:
MSMg01no345_i12.g1 PHD_FILE: MSMg01no345_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:00 2005
         (448 letters)



>mm_chr13_116481698_116482547
          Length = 850

 Score =  797 bits (412), Expect = 0.0
 Identities = 440/450 (97%), Gaps = 2/450 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattctgactagaagaaaacatctgttggtttctatcacatatccttggtaacgggagac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 650 cattctgactagaagaaaacatctgttggtttctatcacatatccttggtaaagggagac 591

                                                                       
Query: 61  tcatacctttgagaaacttaagaaaagcaatgtaacttttcctttggaaatgttattagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tcatacctttgagaaacttaagaaaagcaatgtaacttttcctttggaaatgttattagg 531

                                                                       
Query: 121 cattaattacaaaccttcctgagattttgttcagggtttttaacaggagcttttaaaatt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cattaattacaagccttcctgagattttgttcagggtttttaacaggagcttttaaaatt 471

                                                                       
Query: 181 ttggaaaaattattctttgacaaattcataggtgtgtaaaatacattcaggccatacttg 240
           |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttggaaaaattattttttgacaacttcataggtgtgtaaaatacattcaggccatacttg 411

                                                                       
Query: 241 tcttttatgc--ctctctctctctagccgccagtcctccctctttccaagttctcaccac 298
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tcttttatgcctctctctctctctagccgccagtcctccctctttccaagttctcaccac 351

                                                                       
Query: 299 tctgggaacaaagccctcctactgtacagaaaaacaaaatggcaaatcagtagctgcaga 358
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tctaggaacaaagccctcctactgtacagaaaaacaaaatggcaaatcagtagctgcaga 291

                                                                       
Query: 359 agttagttttatgcagtccaaaatttaggtaaatttgcaaagggactagcaacataaaaa 418
           ||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 290 agttacttttatgcagtctaaaatttaggtaaatttgcaaagggactaccaacataaaaa 231

                                         
Query: 419 atgtgattgttttaagaaaattctttgtac 448
           ||||||||||||||||||||||||||||||
Sbjct: 230 atgtgattgttttaagaaaattctttgtac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 850
Length adjustment: 10
Effective length of query: 438
Effective length of database: 840
Effective search space:   367920
Effective search space used:   367920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)