BAC Information

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BAC

Clone NameMSMg01-345O23
Chromosome13 (Build37)
Map Location 27,067,491 - 27,067,945
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957
Downstream genePrl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345O23.T7 (MSMg01no345_o23.b1)MSMg01-345O23.TJ (MSMg01no345_o23.g1)
ACCAG458640AG458641
length740561
length of high quality
(start - end)		459 (39 - 497)---
definitionCHROMAT_FILE: MSMg01no345_o23.b1 PHD_FILE: MSMg01no345_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:30 2005CHROMAT_FILE: MSMg01no345_o23.g1 PHD_FILE: MSMg01no345_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCC
CCTGTACTGGCGCATATGATCTTCATAAGATCAAGGGCCTCTATTCCCAT
TGATGGCCGACTAGGCCATCCTCTGCCACATATGCAGCTAGAGACACAAT
CAATGTCCTTTCTTCTTATACCCTGCCTCAAACTACTTCTCCATCTGCCT
TATTTAAACTAGAAAACATAGAAAATGGATTATTTGTATAAGATTTATGG
TTCTATTGAAAAAATAATCATGTTTCAAATTAAAATATAATTATAGCTCT
TCCTCCTCACTGTTCTCTCTGCAGTCTCTTCCCTGACCCCTCCCTCCACC
CTTCCTATGTGCCCCTTCCCTTACCTCACATTGATAGCCTCTTTTTGAAT
ATTGTTGTTACATATATGCAGAAATATATAAATACCACTCTCTGCATTTA
TTTAATGTGGCTTGTATGTATATGACTTCAGAGCTTTGTACTTTCGATAT
CAAAATAATTAAATAGAAATTGTTTAAATGAAATGTGTTATGGGGCCTCA
CTATTAANCAGCAAAAAGGAAAGTCTAAATGAGTCNGAAACCAAAAGATT
TCCAAACAGCCTTTTCCTGAAAATTGGGTGCCTTCCTCCAAGGCAAAGAA
TTGGGGATAAATTAAAAAAATGAACCCCCCGGGGAAGGATTTTTCCAAAA
AAGAAAAAAAAACTTATTTAAACCAACAAAAGCGGCCCTG

CATGTAGGTAGGCTGGGGCGCTGGTTTCCAATAGTGAACATANAGATTCA
AAATCGGCTGAGATACGATGGAAGAGCACTGAAAATGTCACCTCTATCTC
GGNAATGAATCAACAACTGAATCACTCCACATCAATGCTAAACAAATCCG
GAACAAAGTGCGGGAGGAAAGAGGACCTTCTGTGGGAAGGGGGTGAAACA
TTGAAAACCGGGGGCCCAAATTGTATTTACGGGGGAGCAAATCCTTGGGC
CCCCCAAAAACCCTGGGAAAAAAATTTTTTGTCCCCCCCCTTTTTTTTCC
AATTGAAAACCCCCCCCCCCCAAAAAATAAAAAAAGGGGTTCCCCGGGGT
CCCCCCTTTTAAAAATTTTTTTTTTTTTTCGGGAATGGTGTGTTTTCTTT
GGGGGGGGTTTTTTTAATAAAAATTTTATTTTTTTTTTATTGTTNATTTT
CTTTTTTTTTATAAAAAAATTTTTTCTCTCCAAACAATAAAAAAAAAAAA
ATACACTTCCTCCCCTCTTTTTTTTTTTTATACTATTCTTTTACAAGGGG
GGGGGGGAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_o23.b1 MSMg01no345_o23.b1 CHROMAT_FILE:
MSMg01no345_o23.b1 PHD_FILE: MSMg01no345_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:30 2005
         (459 letters)



>mm_chr13_27067287_27068145
          Length = 859

 Score =  864 bits (447), Expect = 0.0
 Identities = 453/455 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcccctgtactggcgcatatgatcttcataagatcaagggcctctattcccattg 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcccctgtactggtgcatatgatcttcataagatcaagggcctctattcccattg 264

                                                                       
Query: 65  atggccgactaggccatcctctgccacatatgcagctagagacacaatcaatgtcctttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atggccgactaggccatcctctgccacatatgcagctagagacacaatcaatgtcctttc 324

                                                                       
Query: 125 ttcttataccctgcctcaaactacttctccatctgccttatttaaactagaaaacataga 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 ttcttataccctgcctcaaactacttctccatctgccttatttaaactggaaaacataga 384

                                                                       
Query: 185 aaatggattatttgtataagatttatggttctattgaaaaaataatcatgtttcaaatta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatggattatttgtataagatttatggttctattgaaaaaataatcatgtttcaaatta 444

                                                                       
Query: 245 aaatataattatagctcttcctcctcactgttctctctgcagtctcttccctgacccctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaatataattatagctcttcctcctcactgttctctctgcagtctcttccctgacccctc 504

                                                                       
Query: 305 cctccacccttcctatgtgccccttcccttacctcacattgatagcctctttttgaatat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctccacccttcctatgtgccccttcccttacctcacattgatagcctctttttgaatat 564

                                                                       
Query: 365 tgttgttacatatatgcagaaatatataaataccactctctgcatttatttaatgtggct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgttgttacatatatgcagaaatatataaataccactctctgcatttatttaatgtggct 624

                                              
Query: 425 tgtatgtatatgacttcagagctttgtactttcga 459
           |||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtatgtatatgacttcagagctttgtactttcga 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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