Query= MSMg01no346_d20.b1 MSMg01no346_d20.b1 CHROMAT_FILE:
MSMg01no346_d20.b1 PHD_FILE: MSMg01no346_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:53 2005
(546 letters)
>mm_chr13_9486111_9487056
Length = 946
Score = 1011 bits (523), Expect = 0.0
Identities = 538/543 (99%)
Strand = Plus / Minus
Query: 4 ggaattctagcattccacggagcgaaatcagaagaataacaagttcaaagccagcctggg 63
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 ggaattctagcaacccagggagcgaaatcagaagaataacaagttcaaagccagcctggg 843
Query: 64 ctatacacagtaaagaccctatctcaaaacaaaatgtgaagccaaggctggaaataaatc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ctatacacagtaaagaccctatctcaaaacaaaatgtgaagccaaggctggaaataaatc 783
Query: 124 taagtgataaagtgctttcctagcatatacaagcccagtactacaaaaatataagggaaa 183
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 782 taagtgataaagtgctttcctcgcagatacaagcccagtactacaaaaatataagggaaa 723
Query: 184 gatcaacagataaatcccaaatttacagacaaaaatacaagcaaaaaacacataagattg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gatcaacagataaatcccaaatttacagacaaaaatacaagcaaaaaacacataagattg 663
Query: 244 aacaacactctcagaaaagacataatttttcttttctcttcccacaagaaaaattctctt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aacaacactctcagaaaagacataatttttcttttctcttcccacaagaaaaattctctt 603
Query: 304 attttgtagactagtgtttcaaaaaaatttcaagttagaaaagtaacagttggcctagca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 attttgtagactagtgtttcaaaaaaatttcaagttagaaaagtaacagttggcctagca 543
Query: 364 aatgcaaatgttacagtgacagaaaaagacaagtgtcattgtggtcacaggcaagtttgc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aatgcaaatgttacagtgacagaaaaagacaagtgtcattgtggtcacaggcaagtttgc 483
Query: 424 aaactctgaccccatgaaattggagcaaaatccaacttaatcgctacctggctctagaca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aaactctgaccccatgaaattggagcaaaatccaacttaatcgctacctggctctagaca 423
Query: 484 tgaaatcttcaagagccccttgctcttcaaggataaaatttgtacaattgagctactttc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgaaatcttcaagagccccttgctcttcaaggataaaatttgtacaattgagctactttc 363
Query: 544 agg 546
|||
Sbjct: 362 agg 360
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_d20.g1 MSMg01no346_d20.g1 CHROMAT_FILE:
MSMg01no346_d20.g1 PHD_FILE: MSMg01no346_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:53 2005
(533 letters)
>mm_chr13_9290589_9291521
Length = 933
Score = 984 bits (509), Expect = 0.0
Identities = 527/533 (98%)
Strand = Plus / Plus
Query: 1 cttaagggggtcctagctatactaaataaatgagttccaaaacaagataatttttatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaagggggtcctagctatactaaataaatgagttccaaaacaagataatttttatgtt 260
Query: 61 gtatattcatcaaaattttcatttagaaagtagtataaatgcttcctacagattggaatt 120
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gtatatacatcaaaattttcatttagaaagtagtataaatgcttcctacacattggaatt 320
Query: 121 cacatgacaagtttaaatgtaaatcatggaacattaattgtatcttcatataatttttgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacatgacaagtttaaatgtaaatcatggaacattaattgtatcttcatataatttttgc 380
Query: 181 atatctatgaatccacctgttctttaagctgtgaatatattcagtcttgttttaggtggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatctatgaatccacctgttctttaagctgtgaatatattcagtcttgttttaggtggt 440
Query: 241 gtcgtggttgtcagaattaaaataaataagatattggctcatttaaatgttttaaatcta 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccgtggttgtcagaattaaaataaataagatattggctcatttaaatgttttaaatcta 500
Query: 301 aagtttctcctatctgtataataactcagtcttaaagatgcaatttgactttcagtggat 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtttcccctatctgtataataactcagtcttaaagatgcaatttgactttcagtggat 560
Query: 361 tatattaagttgattatggatgactgagtcattatactacattttgagttaattatattt 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 tatattaagttgattatggatgactgagtcattatactacattttgaattaattatattt 620
Query: 421 ttcatcttgacttcatactgtagagggattctataatatctactgtaggatcagatgaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcatcttgacttcatactgtagagggattctataatatctactgtaggatcagatgaaa 680
Query: 481 gtgttgatgatgtgactgctaactcctgtattctctgggaagacagttagagt 533
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 gtgttgatgatgtgactgctaactcctgtattctctgggaagatagttagagt 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
