BAC Information

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BAC

Clone NameMSMg01-348I24
Chromosome13 (Build37)
Map Location 69,747,077 - 69,938,940
singlet/doubletdoublet
Overlap geneSrd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik
Upstream gene1700001L19Rik, Adcy2, LOC666205, LOC218332, Pols, A530095I07Rik
Downstream geneMed10, EG620143, LOC100042291, 4930520P13Rik, EG633042, BC018507, EG620473, Adamts16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348I24.T7 (MSMg01no348_i24.b1)MSMg01-348I24.TJ (MSMg01no348_i24.g1)
ACCAG460629AG460630
length753761
length of high quality
(start - end)		550 (37 - 586)497 (67 - 563)
definitionCHROMAT_FILE: MSMg01no348_i24.b1 PHD_FILE: MSMg01no348_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:53 2005CHROMAT_FILE: MSMg01no348_i24.g1 PHD_FILE: MSMg01no348_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,938,395 - 69,938,940)(69,747,077 - 69,747,573)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCC
CAATTCTGAAAAGAGACATGATTATTTTAGTGTACAGGAGAGAAGCCCGC
CTTCTTAACCTCCCAGGAAGTGCTGCGGTTGAGTTGATCCAGGCCCCGAG
GAAGCACATTTTAAATGAGTTTCCACATACAGCAACTCTGAGAAAATAAT
AAATATGAGAGAAAGAATAAAGAGGAGGCAAAAGAAGATGGAAACATTAT
CAGGCCACTGTGCTGTGACCCGAGAGAAGGAGCTCGAGGAGGGAGGGGAC
CAGAAGTCTGAAGAGTAAGAATACTGGCATCCCTCAAACCCAAGAGTCCC
TGAAGCAGAATCCCAGGGCTCCCAGAAAGGATAGACACTGCCCCCTCATC
TCAAAGATATGGGAACCGAGAAGGAGAAAAAAGCCCAGCTGACTTTGTAG
AACACTGGAGCGCTTGGGGGCATGAAAAGTACGTTATCAGGCATGCCATA
CTAAAACAAGCAGTAACATGGATGAAGATGGTTATTGTAAGCTGGGGACT
GATAAATGAGGTCAGACACATGGCCTTCTGGTCACTAAATTTGCCCTAAG
TTACAAACTCAACATCTGTGGCTATTATTTATTCTTAAGGCAGAGTCTCA
CGTAGCCCAGTCTGCCTTTGAATCACAGCGCAGCTGAGGAAATGTGGGAA
TTCTGGAACACCTGCCTCTACTTCCTGATGGAAGGATAACGGGAAACCCA
ACN

GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGTGAGATAGAATGATTCCCTGTCCCCACTCCCC
CAGTTGAATAGCTGGGTTGCTCCAGACTGGGAAGAAAGAAATAAAGTAGA
ACTAATGATGAATCAGGCTACCAGGGGGCTGAGCAGGTAGCAGGTTTGTG
AAGCACGCTAGGAAAACACCCGTGCTGCACATGTTTGGGATACATGTATT
CTCACTGCTAGACGTTAGTGCTGGCACTAATGTCACATGTTACGCTTGTA
TGAAGCTCTGGGGAAACTGAGACCCCAGTCCGTGAATTGAGAGGTCAAGT
TTAATGGTTACAACTGGTCTCAGCTCAACCCCACTGGTCCTCTGACTTAT
CTGATTGCTTATCTCTAAGGCACGGATCCCGGTACAGATCTGAATTTGCC
TCTGTGCCTCATTCTGAACTCTGTAACTACTGTATGATAAGCGTCTGCAA
ACGCATGGATTTGAATAAGACAGTGATGTTTAGTGCCTATGAAACAGTGA
ATAGAGCCTCGCAGTGGGCTCATGAAAACTGCTCCTTCTCCTTCTAAGTT
TCCCATTTATGTGCCTGAGATAAGGGCGCTTGTGAACCCTGATCTTCCGT
TACCTCCCCTCGTTCCAAGGACCAGATCAGGCGACTTCCCAAGGAGTACT
CCTCCCAAAACAGAAAAAGTGAACGCTGTTTCCAATAAAAACACTTTCTG
CAAAAAATAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_i24.b1 MSMg01no348_i24.b1 CHROMAT_FILE:
MSMg01no348_i24.b1 PHD_FILE: MSMg01no348_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:53 2005
         (550 letters)



>mm_chr13_69938191_69939140
          Length = 950

 Score = 1056 bits (546), Expect = 0.0
 Identities = 546/546 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgcccaattctgaaaagagacatgattattttagtgtacaggagagaagcccgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gaattctgcccaattctgaaaagagacatgattattttagtgtacaggagagaagcccgc 691

                                                                       
Query: 65  cttcttaacctcccaggaagtgctgcggttgagttgatccaggccccgaggaagcacatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cttcttaacctcccaggaagtgctgcggttgagttgatccaggccccgaggaagcacatt 631

                                                                       
Query: 125 ttaaatgagtttccacatacagcaactctgagaaaataataaatatgagagaaagaataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttaaatgagtttccacatacagcaactctgagaaaataataaatatgagagaaagaataa 571

                                                                       
Query: 185 agaggaggcaaaagaagatggaaacattatcaggccactgtgctgtgacccgagagaagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agaggaggcaaaagaagatggaaacattatcaggccactgtgctgtgacccgagagaagg 511

                                                                       
Query: 245 agctcgaggagggaggggaccagaagtctgaagagtaagaatactggcatccctcaaacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agctcgaggagggaggggaccagaagtctgaagagtaagaatactggcatccctcaaacc 451

                                                                       
Query: 305 caagagtccctgaagcagaatcccagggctcccagaaaggatagacactgccccctcatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 caagagtccctgaagcagaatcccagggctcccagaaaggatagacactgccccctcatc 391

                                                                       
Query: 365 tcaaagatatgggaaccgagaaggagaaaaaagcccagctgactttgtagaacactggag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcaaagatatgggaaccgagaaggagaaaaaagcccagctgactttgtagaacactggag 331

                                                                       
Query: 425 cgcttgggggcatgaaaagtacgttatcaggcatgccatactaaaacaagcagtaacatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cgcttgggggcatgaaaagtacgttatcaggcatgccatactaaaacaagcagtaacatg 271

                                                                       
Query: 485 gatgaagatggttattgtaagctggggactgataaatgaggtcagacacatggccttctg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gatgaagatggttattgtaagctggggactgataaatgaggtcagacacatggccttctg 211

                 
Query: 545 gtcact 550
           ||||||
Sbjct: 210 gtcact 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no348_i24.g1 MSMg01no348_i24.g1 CHROMAT_FILE:
MSMg01no348_i24.g1 PHD_FILE: MSMg01no348_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:54 2005
         (497 letters)



>mm_chr13_69746877_69747773
          Length = 897

 Score =  953 bits (493), Expect = 0.0
 Identities = 496/497 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgagatagaatgattccctgtccccactcccccagttgaatagctgggttgctccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgagatagaatgattccctgtccccactcccccagttgaatagctgggttgctccaga 260

                                                                       
Query: 61  ctgggaagaaagaaataaagtagaactaatgatgaatcaggctaccagggggctgagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggaagaaagaaataaagtagaactaatgatgaatcaggctaccagggggctgagcag 320

                                                                       
Query: 121 gtagcaggtttgtgaagcacgctaggaaaacacccgtgctgcacatgtttgggatacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagcaggtttgtgaagcacgctaggaaaacacccgtgctgcacatgtttgggatacatg 380

                                                                       
Query: 181 tattctcactgctagacgttagtgctggcactaatgtcacatgttacgcttgtatgaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattctcactgctagacgttagtgctggcactaatgtcacatgttacgcttgtatgaagc 440

                                                                       
Query: 241 tctggggaaactgagaccccagtccgtgaattgagaggtcaagtttaatggttacaactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctggggaaactgagaccccagtccgtgaattgagaggtcaagtttaatggttacaactg 500

                                                                       
Query: 301 gtctcagctcaaccccactggtcctctgacttatctgattgcttatctctaaggcacgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctcagctcaaccccactggtcctctgacttatctgattgcttatctctaaggcacgga 560

                                                                       
Query: 361 tcccggtacagatctgaatttgcctctgtgcctcattctgaactctgtaactactgtatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcccggtacagatctgaatttgcctctgtgcctcattctgaactctgtaactactgtatg 620

                                                                       
Query: 421 ataagcgtctgcaaacgcatggatttgaataagacagtgatgtttagtgcctatgaaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataagcgtctgcaaacgcatggatttgaataagacagtgatgtttagtgcctatgaaaca 680

                            
Query: 481 gtgaatagagcctcgca 497
           ||||| |||||||||||
Sbjct: 681 gtgaaaagagcctcgca 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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