BAC Information

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BAC

Clone NameMSMg01-349D09
Chromosome13 (Build37)
Map Location 59,406,311 - 59,608,691
singlet/doubletdoublet
Overlap geneAgtpbp1
Upstream geneKif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510, LOC435361, Ntrk2, LOC100041533
Downstream geneMak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349D09.T7 (MSMg01no349_d09.b1)MSMg01-349D09.TJ (MSMg01no349_d09.g1)
ACCAG461122AG461123
length748776
length of high quality
(start - end)
540 (40 - 579)478 (76 - 553)
definitionCHROMAT_FILE: MSMg01no349_d09.b1 PHD_FILE: MSMg01no349_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:45 2005CHROMAT_FILE: MSMg01no349_d09.g1 PHD_FILE: MSMg01no349_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,608,161 - 59,608,691)(59,406,311 - 59,406,790)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATT
CTACATCTTGACCTGAAGGCAGCAGAACATATATACTTGGGCATGCAAAA
CACTCATATACACGAATTAAAAGCAAGCCTTTTAAAAACTGTTGGAATAC
TACCTAAAGGACACACTGTCCTTTCCGTAGTCTGGGATACTGGAAGACGC
ATCTTAGTACTACAGAGCTGTTATCCCCACCGCCAGTAGGGTCTCAGGTG
AGAGAGGGCTCCTGTGATGTTAGGATGCAGACCGTGAGGAGCTGGGGTTT
GAACCTGACACATGCCGTGGAACTGGCAGGTTCACAGCTATGAATTAACC
TTCCCAGGTAAGAGCAGGGGTTGAAATGCGGTGGGGTTTTTGTTGTTGTT
TCTATTTTGTTTCAGGGCACTTGGGGGTGGTGGAAGCCATACTTTTCACA
TTAATCTTCTCGAGTTCCCATCAAAGTACAAGACTTTAATGATAAACATT
CAAGTATGTTTTGTTCACATCTCAAGGTTCTAATTAAAAACCCCTGTGAT
GATCAAGAGCATAAAGAGTGGGGAGTGAGGGAGATGGGAACAGGGACTGA
TTGGCCTGCAGGAAAAGTGTGTGTGCCTGTGTGCACATGTCCCAGAACCG
GATTTGGTTAGTTGATTACAAATGCTACCTCTTTATGGGCCCTTTACCTG
ATAAACCATGTCATAATTTGCCTCACAAGTGTCTTCCTCCCGGTCATG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGAAAGACTGCTGGAACACAAAT
ACGAACGTGGGGAACTAAATAAAGCTTTTAACAATGCATCTCTTGTCAAG
GTTTTCTGGTCGACAGCAAAGTCCAGGGATGGCCGTATGAAGCCTTAGGT
AGTTGCTGTCTGGGTTTACAAGGTAAACAATATCAATCAGGCTCAGGGAG
AAGAAAATCCAACAGCCTGGGTCTCAGAGAGCTATGGAAAGGACAGCCTT
GGGCTGAGGCAATGACTCAGTGCATAGTTATTGCCAGCAAGTGTAAAGAC
CAGAGTTCTGATCCCCAAAGTCCACATAAAAGTCAAGTGAGTGTGGTACC
CAGCATGCAATCCCAGCACATGAGAATCGGAGACAGAAAGTCTCTAGAGA
ACACTTACTCACCAGATCAGCCACACTGGGCTTAGAGAGACCCTGCATCA
ACATATAATGAGGAGAATGACCAGGGGAGATGGCAGGCATCAACACTGGG
CCTGCAAACATACACAGACATACACCCTCACACAGACACATACACACAGA
GAGACCCTCCCATACTTACTCTGACACACCCCGACATGCTCAGTACCTCC
ATTGAAGAACTTATTGACTTCCTCCGATTTTGCCCGAATCTCCTCTTATA
TACCCCTTGACCCCCCCCTCGAATACTGCCCTTCCCCTCCCCCGAAAACC
CCTCTCGAATTGCTTTCAAGCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_d09.b1 MSMg01no349_d09.b1 CHROMAT_FILE:
MSMg01no349_d09.b1 PHD_FILE: MSMg01no349_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:45 2005
         (540 letters)



>mm_chr13_59607955_59608891
          Length = 937

 Score =  955 bits (494), Expect = 0.0
 Identities = 523/534 (97%), Gaps = 3/534 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctacatcttgacctgaaggcagcagaacatatatacttgggcatgcaaaacactc 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gaattctacatcttgacctgaaggcagcagaacatatatacttgggcatgcaaaacactc 678

                                                                       
Query: 67  atatacacgaattaaaagcaagccttttaaaaactgttggaatactacctaaaggacaca 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atatacacgaattaaaagcaagccttttaaaaactgttggaatactacctaaaggacaca 618

                                                                       
Query: 127 ctgtcctttccgtagtctgggatactggaagacgcatcttagtactacagagctgttatc 186
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 617 ctgtcctttccgtagtctgggatactggaagatgcatcttagtactacagagctgttatc 558

                                                                       
Query: 187 cccaccgccagtagggtctcaggtgagagagggctcctgtgatgttaggatgcagaccgt 246
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cccaccgccagtggggtctcaggtgagagagggctcctgtgatgttaggatgcagaccgt 498

                                                                       
Query: 247 gaggagctggggtttgaacctgacacatgccgtggaactggcaggttcacagctatgaat 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaggagctggggtttgaacctgacacatgccgtggaactggcaggttcacagctatgaat 438

                                                                       
Query: 307 taaccttcccaggtaagagcaggggttgaaatgcggtggggtttttgttgttgtttctat 366
           ||||||   ||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 437 taacct---caggtaagagcaggggttgaaatgctgtggggtttttgttgttgtttttat 381

                                                                       
Query: 367 tttgtttcagggcacttgggggtggtggaagccatacttttcacattaatcttctcgagt 426
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttgtttcagggcacttgggagtggtggaagccatacttttcacattaatcttctcgagt 321

                                                                       
Query: 427 tcccatcaaagtacaagactttaatgataaacattcaagtatgttttgttcacatctcaa 486
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 320 tcccatcaaagtacaagactttaatgataaacattaaagtatgttttgttcacatctcat 261

                                                                 
Query: 487 ggttctaattaaaaacccctgtgatgatcaagagcataaagagtggggagtgag 540
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 260 ggttctaattaaaaacccctgtgatgatcaagagcataaagagtgaggagtgag 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 937
Length adjustment: 10
Effective length of query: 530
Effective length of database: 927
Effective search space:   491310
Effective search space used:   491310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no349_d09.g1 MSMg01no349_d09.g1 CHROMAT_FILE:
MSMg01no349_d09.g1 PHD_FILE: MSMg01no349_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:45 2005
         (478 letters)



>mm_chr13_59406111_59406988
          Length = 878

 Score =  847 bits (438), Expect = 0.0
 Identities = 469/480 (97%), Gaps = 2/480 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgaaagactgctggaacacaaatacgaacgtggggaactaaataaagcttttaacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgaaagactgctggaacacaaatacgaacgtggggaactaaataaagcttttaacaat 260

                                                                       
Query: 61  gcatctcttgtcaaggttttctggtcgacagcaaagtccagggatggccgtatgaagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatctcttgtcaaggttttctggtcgacagcaaagtccagggatggccgtatgaagcct 320

                                                                       
Query: 121 taggtagttgctgtctgggtttacaaggtaaacaatatcaatcaggctcagggagaagaa 180
           ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct: 321 taggtagttgctgtctgggtttacaaggtgaacaatatcgatcaggcccagggagaagaa 380

                                                                       
Query: 181 aatccaacagcctgggtctcagagagctatggaaaggacagccttgggctgaggcaatga 240
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 aatccaacagcttgggtctcagagagctatggaaaggacaggcttgggctgaggcaatga 440

                                                                       
Query: 241 ctcagtgcata--gttattgccagcaagtgtaaagaccagagttctgatccccaaagtcc 298
           |||||||||||  | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcagtgcataaagatcttgccagcaagtgtaaagaccagagttctgatccccaaagtcc 500

                                                                       
Query: 299 acataaaagtcaagtgagtgtggtacccagcatgcaatcccagcacatgagaatcggaga 358
           |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 acataaaagtcaggtgagtgtggtagccagcatgcaatcccagcacatgagaatcggaga 560

                                                                       
Query: 359 cagaaagtctctagagaacacttactcaccagatcagccacactgggcttagagagaccc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagaaagtctctagagaacacttactcaccagatcagccacactgggcttagagagaccc 620

                                                                       
Query: 419 tgcatcaacatataatgaggagaatgaccaggggagatggcaggcatcaacactgggcct 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcatcaacatataatgaggagaatgaccaggggagatggcaggcatcaacactgggcct 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)