Query= MSMg01no349_d09.b1 MSMg01no349_d09.b1 CHROMAT_FILE:
MSMg01no349_d09.b1 PHD_FILE: MSMg01no349_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:45 2005
(540 letters)
>mm_chr13_59607955_59608891
Length = 937
Score = 955 bits (494), Expect = 0.0
Identities = 523/534 (97%), Gaps = 3/534 (0%)
Strand = Plus / Minus
Query: 7 gaattctacatcttgacctgaaggcagcagaacatatatacttgggcatgcaaaacactc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gaattctacatcttgacctgaaggcagcagaacatatatacttgggcatgcaaaacactc 678
Query: 67 atatacacgaattaaaagcaagccttttaaaaactgttggaatactacctaaaggacaca 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atatacacgaattaaaagcaagccttttaaaaactgttggaatactacctaaaggacaca 618
Query: 127 ctgtcctttccgtagtctgggatactggaagacgcatcttagtactacagagctgttatc 186
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 617 ctgtcctttccgtagtctgggatactggaagatgcatcttagtactacagagctgttatc 558
Query: 187 cccaccgccagtagggtctcaggtgagagagggctcctgtgatgttaggatgcagaccgt 246
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cccaccgccagtggggtctcaggtgagagagggctcctgtgatgttaggatgcagaccgt 498
Query: 247 gaggagctggggtttgaacctgacacatgccgtggaactggcaggttcacagctatgaat 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaggagctggggtttgaacctgacacatgccgtggaactggcaggttcacagctatgaat 438
Query: 307 taaccttcccaggtaagagcaggggttgaaatgcggtggggtttttgttgttgtttctat 366
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 437 taacct---caggtaagagcaggggttgaaatgctgtggggtttttgttgttgtttttat 381
Query: 367 tttgtttcagggcacttgggggtggtggaagccatacttttcacattaatcttctcgagt 426
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttgtttcagggcacttgggagtggtggaagccatacttttcacattaatcttctcgagt 321
Query: 427 tcccatcaaagtacaagactttaatgataaacattcaagtatgttttgttcacatctcaa 486
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 320 tcccatcaaagtacaagactttaatgataaacattaaagtatgttttgttcacatctcat 261
Query: 487 ggttctaattaaaaacccctgtgatgatcaagagcataaagagtggggagtgag 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 260 ggttctaattaaaaacccctgtgatgatcaagagcataaagagtgaggagtgag 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 937
Length adjustment: 10
Effective length of query: 530
Effective length of database: 927
Effective search space: 491310
Effective search space used: 491310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_d09.g1 MSMg01no349_d09.g1 CHROMAT_FILE:
MSMg01no349_d09.g1 PHD_FILE: MSMg01no349_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:45 2005
(478 letters)
>mm_chr13_59406111_59406988
Length = 878
Score = 847 bits (438), Expect = 0.0
Identities = 469/480 (97%), Gaps = 2/480 (0%)
Strand = Plus / Plus
Query: 1 tctgaaagactgctggaacacaaatacgaacgtggggaactaaataaagcttttaacaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgaaagactgctggaacacaaatacgaacgtggggaactaaataaagcttttaacaat 260
Query: 61 gcatctcttgtcaaggttttctggtcgacagcaaagtccagggatggccgtatgaagcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatctcttgtcaaggttttctggtcgacagcaaagtccagggatggccgtatgaagcct 320
Query: 121 taggtagttgctgtctgggtttacaaggtaaacaatatcaatcaggctcagggagaagaa 180
||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct: 321 taggtagttgctgtctgggtttacaaggtgaacaatatcgatcaggcccagggagaagaa 380
Query: 181 aatccaacagcctgggtctcagagagctatggaaaggacagccttgggctgaggcaatga 240
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 aatccaacagcttgggtctcagagagctatggaaaggacaggcttgggctgaggcaatga 440
Query: 241 ctcagtgcata--gttattgccagcaagtgtaaagaccagagttctgatccccaaagtcc 298
||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcagtgcataaagatcttgccagcaagtgtaaagaccagagttctgatccccaaagtcc 500
Query: 299 acataaaagtcaagtgagtgtggtacccagcatgcaatcccagcacatgagaatcggaga 358
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 acataaaagtcaggtgagtgtggtagccagcatgcaatcccagcacatgagaatcggaga 560
Query: 359 cagaaagtctctagagaacacttactcaccagatcagccacactgggcttagagagaccc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagaaagtctctagagaacacttactcaccagatcagccacactgggcttagagagaccc 620
Query: 419 tgcatcaacatataatgaggagaatgaccaggggagatggcaggcatcaacactgggcct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcatcaacatataatgaggagaatgaccaggggagatggcaggcatcaacactgggcct 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|