BAC Information

Click to search

BAC

Clone NameMSMg01-349M14
Chromosome13 (Build37)
Map Location 113,704,504 - 113,705,176
singlet/doubletsinglet
Overlap geneSkiv2l2
Upstream geneLOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282
Downstream geneDhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349M14.T7 (MSMg01no349_m14.b1)MSMg01-349M14.TJ (MSMg01no349_m14.g1)
ACCAG461558AG461559
length1,505762
length of high quality
(start - end)
---675 (72 - 746)
definitionCHROMAT_FILE: MSMg01no349_m14.b1 PHD_FILE: MSMg01no349_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:30 2005CHROMAT_FILE: MSMg01no349_m14.g1 PHD_FILE: MSMg01no349_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAGAGCAGCACAGCGACCCAGCTCGGTCGTTCTGCGAAGCCGAGAGGAC
CGGCGCGTGAAAGCGTATCTCTCCTCGCGCGCGATACCGTGTATACGACG
GTTATGCGGGCTGGCGTCTTGCGTATGGTGATAGCCCGCCGCTGGGTTCG
CGAGAGGCGCGATCTAATATTCCTAAGCGTCGCGCGCCGCAGCGCGCGCT
GTGTCGGGCACGGTCATTATATTACTTCGACCCCAATAGCAAGCGCGCGA
CGTCGTTTATTTTATATAGAGTCGATACCATCGCGCTATAAACCATAGCC
GCAGCTTGGATCTTGATCTAAGTTGACGTCTATCATCTTCCGTACCCGCG
TATTTAGTTATAGNTATTCTAGATGACGCNTAGGCTGTAGCGATCGATCT
GGGTGCGTATGCCTACCATCCTAANATCATGATGTGCGCGCGCGCGCGCT
GGTGTACGTTTTCGCAGACAGTGTCCAATTATGCGTTTCTTCACGAGACG
GGCACTACGCTTATACCGCTATATGACTCGTATGTGGTCGACGATGTCGG
ACACGCGCTAGCTGTGTTTGCACGCGTGNGTCTCGGACGTAACTCTCGAN
TGAACATTCGTATAGCGTTGTAGAGCCCTGTTATATACGGACTCTTACTA
CGATAATNGACAGTTATAGATTCCNCGTGGCTCGTCTCGACGACACGTGA
TTTCGCTATACACATAGTTACTCATACTGACTCANCGCACAGTGCATCGC
ATGACGACGTGTTGATACTTATCGTTATACGCACTTGGTACGGAGTCGAC
ATGTGCGCGAGCGACTATACTCTACGCAGTGGTCGTAATACGCGATACAG
GATTACTATGTAGAGGAGTGTGATAATTAGTGCACCGTAAAGAGGACTGT
CTACTGTGTGAGCGCGGGACACTTGCTAATTGTGTAATGTCGTCGGTCGG
CGGGGCGCGTATTCTAGTTTGCTAGTGCGCTGAGTCTCGATACAGTCGCT
CTATTATTTCTGCGTACACGCAGCGATACGCACAGTGTTTTCGTCATGTC
CACGCACCTCGATGTATACATATATGAGGAGCCTACTGTTACTAAGGGCT
TCTCATCTCGTGAGTCGCACTCCTCATGTNCTCGCACCCACATATTCACG
TTACAGCGCTCTATTTGTATACGTCCGCGCCACCATTACACATTCCGTCG
TTCTCTATTTGCTCGCGGTGTCNTATGAAGCGCGTGTGGCGAGGTGGTCG
CGCCTATCGCACGTTGATGTCACAGTATGTCAGAGACACGCCGATAACAG
TCGCAGAACTGATTTTCTACGNTGTAGTGAATATACGACGCTGTGAGGCG
CACACATANGATACGCTTTAGTGGCGTATGCTATACAGCGCCTCCACAGN
ATGCCTCGATGTGTACGCGACGGCATCTCGACATATCACATTACACCGCT
GCGACGAGCTGGCTGATTGAGTCTCGCCAGATGCCTGACATATTGCTTCA
TCGCG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATTAATACTTAGAAAAGAACTTTTCCAT
AAACAGAGCTATCATAATTTCAAACAAAGAAATGATTTGTTAAATATTAT
ATGAAGGAAAAGATTACATATTGGATTAACTCATTTATGAAACTGTGGAA
GAAAAGCGCAGCCCATTTATGGTTTTCTTCTTCCTTGTAGTCTCTCTATG
TAAATGGATGGACAGAAGTGATGCACCTTTAGAGGCCTGTCAGCAGACTC
AAAGGCTTCTCTAGCAAAAACTATTTGTAGCCACCAACAAACCCGCTGTA
GTCAAGTGACTAGAGTTCAAATGTCCTTGTCCATTTAGTAGTCCAAATGA
TTCATTTCAGATAAACCATGATTCTAGTGTAACAGTTTGTTTATAGTAAA
CAGATTACAAATGAATGTGCAGAAATCTTAAAAGTCATACTTACTGTTTT
TATAATTTCAGGTATGCTATTGCATTGGCTTTAAGAGAAAAACAGCGTGT
AATATTTACCAGCCCTATTAAGGCTCTAAGTAATCAGAAATACCGTGAAA
TGTATGAAGAATTTCAAGATGTGGGACTGATGACTGGAGATGTTACTATT
AATCCCACAGCATCTTGTCTGGTTATGACTACAGAGGTAATTTATTTTGT
GCCTCATCTAAATTTTTTCTTTTTAGCTTAGTCAGTGTATGCCCAGTCAA
ACACTGGATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_m14.g1 MSMg01no349_m14.g1 CHROMAT_FILE:
MSMg01no349_m14.g1 PHD_FILE: MSMg01no349_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:30 2005
         (675 letters)



>mm_chr13_113704304_113705376
          Length = 1073

 Score = 1243 bits (643), Expect = 0.0
 Identities = 667/677 (98%), Gaps = 6/677 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattaatacttagaaaagaacttttccataaacagagctatcataatttcaaacaaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 cattaatacttagaaaagaacttttccataaacagagctatcataatttcaaacaaagaa 814

                                                                       
Query: 61  atgatttgttaaatattatatgaaggaaaagattacatattggattaactcatttatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 atgatttgttaaatattatatgaaggaaaagattacatattggattaactcatttatgaa 754

                                                                       
Query: 121 actgtggaagaaaagcgcagcccatttatggttttcttcttccttgtagtctctctatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 actgtggaagaaaagcgcagcccatttatggttttcttcttccttgtagtctctctatgt 694

                                                                       
Query: 181 aaatggatggacagaagtgatgcacctttagaggcctgtcagcagactcaaaggcttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 aaatggatggacagaagtgatgcacctttagaggcctgtcagcagactcaaaggcttctc 634

                                                                       
Query: 241 tagcaaaaacta--tttgtagccaccaacaaacccgctgtagtcaagtgactagagttca 298
           ||||||||||||     ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 633 tagcaaaaactagg---gtagccaccaacaaacccgctgtagtcaagtgactagag-tca 578

                                                                       
Query: 299 aatgtccttgtccatttagtagtccaaatgattcatttcagataaaccatgattctagtg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aatgtccttgtccatttagtagtccaaatgattcatttcagataaaccatgattctagtg 518

                                                                       
Query: 359 taacagtttgtttatagtaaacagattacaaatgaatgtgcagaaatcttaaaagtcata 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 taacagtttgtttatagtaaacagattacaaatgaatgtgcagaaatcttaaaagtcata 458

                                                                       
Query: 419 cttactgtttttataatttcaggtatgctattgcattggctttaagagaaaaacagcgtg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cttactgtttttataatttcaggtatgctattgcattggctttaagagaaaaacagcgtg 398

                                                                       
Query: 479 taatatttaccagccctattaaggctctaagtaatcagaaataccgtgaaatgtatgaag 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 taatatttaccagccctattaaggctctaagtaatcagaaataccgtgaaatgtatgaag 338

                                                                       
Query: 539 aatttcaagatgtgggactgatgactggagatgttactattaatcccacagcatcttgtc 598
           |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 337 aatttcaagatgtggggctgatgacgggagatgttactattaatcccacagcatcttgtc 278

                                                                       
Query: 599 tggttatgactacagaggtaatttattttgtgcctcatctaaattttttctttttagctt 658
           | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 277 tcgttatgactacagaggtaatttattttgtgcctcatctaaatgttttctttttagctt 218

                            
Query: 659 agtcagtgtatgcccag 675
           |||||||||||||||||
Sbjct: 217 agtcagtgtatgcccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1073
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1063
Effective search space:   706895
Effective search space used:   706895
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)