BAC Information

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BAC

Clone NameMSMg01-350O07
Chromosome13 (Build37)
Map Location 94,382,863 - 94,383,097
singlet/doubletsinglet
Overlap genenone
Upstream geneSerinc5, Ppia-ps13_1124.1, Thbs4, EG624619, EG218444, Papd4, LOC100039163, Homer1, Jmy, EG619883
Downstream geneBhmt, Bhmt2, Dmgdh, Arsb, Cycs-ps3, Lhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350O07.T7 (MSMg01no350_o07.b1)MSMg01-350O07.TJ (MSMg01no350_o07.g1)
ACCAG462395AG462396
length797745
length of high quality
(start - end)
---235 (83 - 317)
definitionCHROMAT_FILE: MSMg01no350_o07.b1 PHD_FILE: MSMg01no350_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:59 2005CHROMAT_FILE: MSMg01no350_o07.g1 PHD_FILE: MSMg01no350_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTAATTTATTATAATTGCGAGCGCTAAACGANTCAAATTTCCGNANNNG
NANGGGGAANNNNNNNGTTCCAATATNGAGGGAAGGNNGGNNTAGGGAAN
AGATGGTGAGGAAGNTAAGGAGAGATGACAGANNANGAGATGAGNTGAAG
AGGANAATTGATTAGNAGTTAGATATTGAGTGTAGGAGATNTGAGTTTGA
ATTATGANTTTNTTGTGTGTNTGATATGAGGTTTAATTTGTAGTTTNTTG
AAGTTTGTTTTTATTATTTGATAAAATGGGGAGTGGGAATGAGNTGAANA
AGATAAGGTAAAGTTGGAGAATTTTTTTTTTTTTNAAGTGGAGGAAAAGA
ATAGAGGAGGTATGGTTTTGTATTCTAGATGTATTAGTTTTAATTTTGTT
TATTGTGAAATTTTGTGTTTTTACCCCCCCTTTTTCTCGATAGTCTATTG
CAGAGTCTTTTCATTATTCTGCCCTTTATTCCTTCTTTTTGATTATTTTG
GAGCGGTCGATCTTTAATGGGTCGTTTCGCTCTTGCTGGTCGTCTCTCAG
GCTTTCGTCGCCTCTTCTCTTTGCGTCATTTCTCATTGCTCATTTTTTTT
CCCTCCCTTCACATCTCATTCCTTTCGTGCTCCCCTCTTTTCCCCCTTCC
TTTTGTCCTTCTTCTTTCCCCCTATTCCCGTTCCTCATACTCCCTCCATC
ATTTCTCTTCCTATCCCCCCTTTCTACTCCTTCTATATTGCCTCTCTCGC
ACTTCTCTCCCCGTTACTTTTCTTCCTTACACATTTTCACATCACCG
TTTTTTTCAATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGGAATCTGGTTGGAG
ACATATAAGGCTTTTCTTGCTGGGTTAGCTGTCCTGGATGTTATCCAAAG
ATTCACATGTCTTAGGACTAGGGGGAAAAAAACTGCCCAAAACAAAAAGG
GATACAGACATTTCTGCCAAGTAACATGAATCTATGCCCATGAAATAGCT
CTTGAAAGCAAAGCCAGGGCTTTTCAGGTCTTCCCTGCTGGTGAGCTGCT
GCCCCCATCTGGAAACGTTGGTAACTGAAGTTTTTGATTTGTTCCAGGCC
AGGTCTCATTCTCTAGGGGCTGCCTTTGCCCTGTGCAAATGTGTTTTTGC
TGAAGTTTGAAGAAGTGCCATAATCCGATAAGTTTATTCAGTCTCTGTCG
AATCCGAATAACTCCAAGGATTTTTATTTTTCCCGGGTCGAATATGTCTC
CTTAGTTTCGCGAACCTTCTGCACTGGTTCCATTCTCCTAATAGGCTAAT
TTATTCTCCGCCTCCTTCTTGTCATCCTCGAACTATACCCTTTTTTCTCA
TCGACCTGCTATTCCTGCCTAATCTATTCTGCCCTCATTTACCCACTCCC
TTCATCCTCCCACTTTATTTACTCCTTGTCTTCTTTTTTTTCTTCTTTTT
TCCATTGTCTTTCTGCTCCTCGCACTCCGTTCACCCCCTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_o07.g1 MSMg01no350_o07.g1 CHROMAT_FILE:
MSMg01no350_o07.g1 PHD_FILE: MSMg01no350_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:59 2005
         (235 letters)



>mm_chr13_94382663_94383297
          Length = 635

 Score =  455 bits (235), Expect = e-132
 Identities = 235/235 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagggaatctggttggagacatataaggcttttcttgctgggttagctgtcctggatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagggaatctggttggagacatataaggcttttcttgctgggttagctgtcctggatgtt 260

                                                                       
Query: 61  atccaaagattcacatgtcttaggactagggggaaaaaaactgcccaaaacaaaaaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atccaaagattcacatgtcttaggactagggggaaaaaaactgcccaaaacaaaaaggga 320

                                                                       
Query: 121 tacagacatttctgccaagtaacatgaatctatgcccatgaaatagctcttgaaagcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacagacatttctgccaagtaacatgaatctatgcccatgaaatagctcttgaaagcaaa 380

                                                                  
Query: 181 gccagggcttttcaggtcttccctgctggtgagctgctgcccccatctggaaacg 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccagggcttttcaggtcttccctgctggtgagctgctgcccccatctggaaacg 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)