Query= MSMg01no350_p11.b1 MSMg01no350_p11.b1 CHROMAT_FILE:
MSMg01no350_p11.b1 PHD_FILE: MSMg01no350_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:05 2005
(462 letters)
>mm_chr13_27200043_27200904
Length = 862
Score = 777 bits (402), Expect = 0.0
Identities = 447/462 (96%)
Strand = Plus / Plus
Query: 1 ctaccccttttgatgtcataaaggcacttggaatataagtaaaacaaaattaattagtac 60
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctacctcttttgatgtaataaaggcacttggaatataagtaaaacaaaattaattagtac 260
Query: 61 cgtgatgattttatttcttttttctataccctttaccttcttccatcatgttattgctct 120
| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 cttgatgactttatttcttttttctataccctttatcttcttccatcatgttattgctct 320
Query: 121 tatgaagacttcaaagagacaattaaacaagcaaggagagattatgcatcattgtgttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgaagacttcaaagagacaattaaacaagcaaggagagattatgcatcattgtgttat 380
Query: 181 ttgctttcagaagaaacacttttattttgcatcgaataatatttggtatggcttgaagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgctttcagaagaaacacttttattttgcatcgaataatatttggtatggcttgaagta 440
Query: 241 attgtcatatgtcttattgtcatatgacacatatatataaataatttttctagcctcttt 300
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 attgtcatatgtcaaattgtcatatgacacatatatataaataatttctctagcctcttt 500
Query: 301 aagacatttatcataaagcaaattgggttttctgttataaagggacaaccaaaaactata 360
|||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct: 501 aagacatttatcataaagtaaattgggttttctgttataaagggataaggaaaaactata 560
Query: 361 acataaacatcaaatatagcaatggatatgaaggtagaatagacttggtaataagggaag 420
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 561 acataaacatcaaatatagcagtggataggaaggtagaatagacttggtaataagggaag 620
Query: 421 tggtaattactagtaatggttattttcaaagcaatgagtaaa 462
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 tggtaattagtagtaatggttattttcaaagcaatgagtaaa 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_p11.g1 MSMg01no350_p11.g1 CHROMAT_FILE:
MSMg01no350_p11.g1 PHD_FILE: MSMg01no350_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:05 2005
(623 letters)
>mm_chr13_27247852_27248874
Length = 1023
Score = 897 bits (464), Expect = 0.0
Identities = 495/512 (96%), Gaps = 14/512 (2%)
Strand = Plus / Minus
Query: 7 tatacatcaccttaattcaagatcttatgtctgccatgtcttctgcaaagtttcctactg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tatacatcaccttaattcaagatcttatgtctgccatgtcttctgcaaagtttcctactg 452
Query: 67 tttttggttataatcaatgctatc-----------aataattatataaacatttgt-ctg 114
|||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 451 tttttggttataatcaatgctatcaataattatataataattatataaacatttgtcct- 393
Query: 115 ctctatagctctaacagacaatttttctagactgttttactaaactcaaatctctttcat 174
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 392 ctctatagctctaacagacaatttatctagactgttttactaaactcaaatctctttcat 333
Query: 175 taacctgaaacactgtaaaatgtttctctcagtaaatgaggtaaaaggcctcaacagata 234
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 332 taacctgaaacactgtaaaatgtttctctcaataaatgaggtaaaaggcctcaacagata 273
Query: 235 caaaaatattaaaataaaaccatgaatcgtatcaggtcactacagactaagactgatttt 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 caaaaatattaaaataaaaccatgaatcgtatcaggtcactacagactaagactgatttt 213
Query: 295 gattaacaacataaatagtagaaatgctgcatacacatggaagctgaacaatactttaat 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gattaacaacataaatagtagaaatgctgcatacacatggaagctgaacaatactttaat 153
Query: 355 caatgattacttggtcaaggatgaaataaaaaaaaa-ttaaagactttttagagtttaat 413
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 152 caatgattacttggtcaaggatgaaataaaaaaaaaattaaagactttttagagtttaat 93
Query: 414 gaaaatgaagccacaacatacccacacttatgggacacaaagaaagtagaccttagagga 473
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 92 gaaaatgaagccacaacatacccaaacttatgggacacaaagaaagtagaccttagagga 33
Query: 474 aaactcatagctataattgcctccaaaaggac 505
||||||||||||||||||||||||||||||||
Sbjct: 32 aaactcatagctataattgcctccaaaaggac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
