Query= MSMg01no351_a22.b1 MSMg01no351_a22.b1 CHROMAT_FILE:
MSMg01no351_a22.b1 PHD_FILE: MSMg01no351_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:13 2005
(464 letters)
>mm_chr13_20429458_20430321
Length = 864
Score = 654 bits (338), Expect = 0.0
Identities = 385/411 (93%), Gaps = 16/411 (3%)
Strand = Plus / Minus
Query: 5 gaattctcaatctaattctaacaactcacaaaaagtatcgtgaaggaagttggtgaggag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 411 gaattctcaatctaattctaacaactcacaaaaagtatcgtgaaggaagttggcgaggag 352
Query: 65 aaaccctctataacctaagagtcatcacttttgcttgaattttacactaggacccttaaa 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaaccctctataacccaagagtcatcacttttgcttgaattttacactaggacccttaaa 292
Query: 125 gttttcttctatcaatagttttttcttggccatataatctgctcactaagtacagtatag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gttttcttctatcaatagttttttcttggccatataatctgctcactaagtacagtatag 232
Query: 185 tactggtattcagagggtccttataatgaaagaaagagaaagaggagagaaaggaatgga 244
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 231 tactggtattcaaagggtccttataatgaaagaaagagaaagaggggagaaaggaatgaa 172
Query: 245 gggagacagaaagggatgcagagagggagaataagggagagagggggagagaga-a---- 299
|||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 171 gggagacagagagggatgcagagagggagaataagggagagagggagagagagagagaga 112
Query: 300 -----------agagagagagagagagagagaagcnnntctctgcatacttcaataacct 348
|||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 111 gagagagagagagagagagagagagagagagaagcaattctctgcatacttcaataacct 52
Query: 349 ctagacttcttgtattatctaatatgtcaatgatatgaaatgatgttatat 399
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 ctagacttcttgtattatctaatatgtcaatgatatgaaatgatgttatat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_a22.g1 MSMg01no351_a22.g1 CHROMAT_FILE:
MSMg01no351_a22.g1 PHD_FILE: MSMg01no351_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:13 2005
(437 letters)
>mm_chr13_20305951_20306785
Length = 835
Score = 745 bits (385), Expect = 0.0
Identities = 422/435 (97%), Gaps = 4/435 (0%)
Strand = Plus / Plus
Query: 1 tctgcttgccttgtgatgaaacaggacatttgttaacattgctttgtagaggctgtgtta 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcttgcctcgtgatgaaacaggacatttgttaacattgctttgtagaggctgtgtta 260
Query: 61 gctacttgactatctattcgcagactttgtcaagcacaggactctggaagacatggtaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctacttgactatctattcgcagactttgtcaagcacaggactctggaagacatggtaag 320
Query: 121 ttccccagtgtcttccaggcactgtgctaagtgctaagtttgtgtacagttcaacagttc 180
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccccagtgtgttccaggcactgcgctaagtgctaagtttgtgtacagttcaacagttc 380
Query: 181 cagtcttcctgattctcga-agaccccagtcacttgattacaatggcagtaagggccaca 239
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtcttcctgattctc-acagaccccagtcacttgattacaatggcagtaagggccaca 439
Query: 240 gaggaaaaatgtgcctgaacttaatgaagtcctcaacaagtgttatttaagtgaaagtct 299
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gacgaaaaatgtgcctgaacttaatgaagtcctcaacaagtgttatttaagtgaaagtct 499
Query: 300 aaagaaaacagagggtacttgtatggacaacagtaacatggctcagattagtagctggct 359
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 500 aaagaaaacag--ggtacttgtatggacaacagtaacatgactcagattagtagctggct 557
Query: 360 gtcaactctcatggcaaggctttggtaagagtattgccctgcatttgaggccagcctggt 419
||||| |||||||||||||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct: 558 gtcaattctcatggcaaggccttggtaagagtagtgccctgcatttgagaccagcctggt 617
Query: 420 ctatatagcgagatt 434
|||||||||||||||
Sbjct: 618 ctatatagcgagatt 632
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 835
Length adjustment: 9
Effective length of query: 428
Effective length of database: 826
Effective search space: 353528
Effective search space used: 353528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
