TTTTTTTTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGG
ATCCGCGGAATTCTTTTTATAATTCTAGGTGAGTGGCCAGATGGAGTGGA
ACAGGAAGAGACTCCACTGCACCCTCGGTTCTCCGTGGCTTCTTCATTCT
CTGTGTACTGCACCGGGATGAGCGATGCTGTGCTCCAGTCACCTCCCAGA
GAGCATCCTGTATGTTAGGGTTCTCTGCATATCTCTGCATTGTGCATCCT
ATGCACTGTCCAGACAAGGGCTGAGCTTCACAGAGATGTTTTACTCTGTA
ACTTCCCCTGACCCTGCACTCTGCCTGTTCACTCTTTCCTCCACCTAACT
TCTGCCAACCAGCTATCTTTTTTCTTCCGCCAAAGCCTGTCTTTTCTGGA
CACTGGCATAGAGGGAACTTTTCGTGTTGGCTTCTCATCACTAAGCCACA
TGCATTTGAGTTCCTTCCACATCCTTTATGGCTTGACAGCTGATGTATTT
TTGGTTGTGAGTCATATTTCATCGTCTGAACGTGATACTGTTTATGTAAC
CCTTCACCCATTAGAGAAAAGTCTTTTTCTAGATTTAGCAACTATTAAGT
AAAGTTACTATAAGTGTTAGTGTGCAGGTTTTTGTGTGGGAATAATTTTT
CATCTCCTTTGAATAAATAGTAGGGTTGCTGAGTTCCATAGTAAAAACAT
GGTATAGTTTATAGGCTTCTTGCAN

NTTTTTTAACAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATCCTTCCCAGGC
TTGCCCTAACGCATGGCAATCCTCCTTTGTTAACCTTCCAAGTCAAAGAA
TCAGAGTCAGGTACCACCAAACCCAACCTAGATTTAAAACTAAGGCACAG
GAAGAAAACTGAACTAGATATAGGGCCCAAGCAGGTAATGTCACCTGAAG
GAAGGAGAGAGCAATTCTGAATGCAAAACGTGGAAGAAACATGGAATTTT
GGTACCTCAGACAGAATCAGTGTCACTATTAAGAAAGACATAACAAGACT
TAAAAAGTCTCCCCAGCATTTCAAAGGAGCTCGTTAATCTAGTTTAGCTA
CTGTCCATAGCCTGGTGTGCACAGCTCTATGTGTGATGGAGGCTAAGTTA
GATGGCAAGAAGATGAAGAGAAGAATGTAACGATGATAACAGTGGATCAA
TGATAACTGTGATGGTTAATGTTGATTGTCAACTTGACAGACTCTAAGAT
CACCTGAGTCACAGGCCTCTGGGCATGACTGTGGGGATGATCTTGCCTAC
ACTAGCTGAGGAGAGAAAACTGGCTTCCCATGGGTGGCATTGGTCCTGGT
TGGAAACCTGGATTATATAACTGGAGAAAGAGACCCCAGTGGATGCATGC
ATTCATCTTCTCTCTGCTCCCGGAATGTGAGGCA

Query= MSMg01no351_h16.b1 MSMg01no351_h16.b1 CHROMAT_FILE:
MSMg01no351_h16.b1 PHD_FILE: MSMg01no351_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:44 2005
         (571 letters)



>mm_chr13_8620829_8621801
          Length = 973

 Score =  870 bits (450), Expect = 0.0
 Identities = 474/484 (97%), Gaps = 5/484 (1%)
 Strand = Plus / Minus

                                                                       
Query: 12  gaattctttttata---attctaggtgagtggccagatggagtggaacaggaagagactc 68
           |||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gaattctttttagagacattctaggtgagtggccagatggagtggaacaggaagagactc 425

                                                                       
Query: 69  cactgcaccctcggttctccgtggcttcttcattctctgtgtactgcaccgggatgagcg 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cactgcaccctcggttctccgtggcttcttcattctctgtgtactgcaccgggatgagcg 365

                                                                       
Query: 129 atgctgtgctccagtcacctcccagagagcatcctgtatgttagggttctctgcata--t 186
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 364 atgctgtgctccagtcacctcccagagagcatcctgtatgttagggttctctgcatatct 305

                                                                       
Query: 187 ctctgcattgtgcatcctatgcactgtccagacaagggctgagcttcacagagatgtttt 246
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ctctgcattgtgcatcctgtgcactgtccagacaagggctgagcttcacagagatgtttt 245

                                                                       
Query: 247 actctgtaacttcccctgaccctgcactctgcctgttcactctttcctccacctaacttc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 244 actctgtaacttcccctgaccctgcactctgcctgttcactctttcctccacctagcttc 185

                                                                       
Query: 307 tgccaaccagctatcttttttcttccgccaaagcctgtcttttctggacactggcataga 366
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 184 tgccaaccagctatcttttttcttcctccaaagcctgtcttttctggacactggcataga 125

                                                                       
Query: 367 gggaacttttcgtgttggcttctcatcactaagccacatgcatttgagttccttccacat 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gggaacttttcgtgttggcttctcatcactaagccacatgcatttgagttccttccacat 65

                                                                       
Query: 427 cctttatggcttgacagctgatgtatttttggttgtgagtcatatttcatcgtctgaacg 486
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 64  cctttatggcttgacagctgatgtatttttggttgtgagtcatatttcattgtctgaacg 5

               
Query: 487 tgat 490
           ||||
Sbjct: 4   tgat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 973
Length adjustment: 10
Effective length of query: 561
Effective length of database: 963
Effective search space:   540243
Effective search space used:   540243
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)