Query= MSMg01no351_n08.b1 MSMg01no351_n08.b1 CHROMAT_FILE:
MSMg01no351_n08.b1 PHD_FILE: MSMg01no351_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:10 2005
(555 letters)
>mm_chr13_55148147_55149101
Length = 955
Score = 799 bits (413), Expect = 0.0
Identities = 450/473 (95%), Gaps = 18/473 (3%)
Strand = Plus / Minus
Query: 4 ggaattctccagtctctacctccctaatgctaggattacaagcttacaccatcatgcttg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ggaattctccagtctctacctccctaatgctaggattacaagcttacaccatcatgcttg 414
Query: 64 tgtggcaggtaactgtctaaacggtttctctaccttgtggtaagtattttagggaaaaaa 123
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 413 tgtggcaggtaactgtctaaactgtttctctaccttgtggtaaatattttagggaaaaaa 354
Query: 124 atacaaagcacaagaagggaatagagagtaacaatgtaacaatttaaaatagttgtcaga 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gtacaaagcacaagaagggaatagagagtaacaatgtaacaatttaaaatagttgtcaga 294
Query: 184 aaggtcctgtttaagatagtagtgacatttggggctggagaggtagctcagcagttagca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aaggtcctgtttaagatagtagtgacatttggggctggagaggtagctcagcagttagca 234
Query: 244 cttgctgtgcttgcagagggcctgggtttgatccccagcacccacttagtggcttataaa 303
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 233 cttgctgtgcttgcagagggcctgggtttgatccccagcacccacatagtggcttataaa 174
Query: 304 tatgactctagttccaggggattcaacactgtctttgacctctgaagtcacatgtgtatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tatgactctagttccaggggattcaacactgtctttgacctctgaagtcacatgtgtatg 114
Query: 364 ttcaggcaaacactcattcacataaaataaaaataataataataa-aa------------ 410
|||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 113 ttcaggcaaacactcattcacataaaataataataataataataataataataataataa 54
Query: 411 -----aaagaaggtggcatttgagtagagacctaaaggaaatgggggaatttt 458
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 taataaaagaaggtggcatttgagtagagacctaaaggaaatgggggaatttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_n08.g1 MSMg01no351_n08.g1 CHROMAT_FILE:
MSMg01no351_n08.g1 PHD_FILE: MSMg01no351_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:10 2005
(508 letters)
>mm_chr13_54956272_54957179
Length = 908
Score = 975 bits (504), Expect = 0.0
Identities = 507/508 (99%)
Strand = Plus / Plus
Query: 1 tgcatgtgggctgtcttggttaagtccctgcaacgatctcatggccactatggcctctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcatgtgggctgtcttggttaagtccctgcaacgatctcatggccactatggcctctct 260
Query: 61 gagctttgtgggatggacagacagctagctgcacatgaccccctgtggctaggcaaacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctttgtgggatggacagacagctagctgcacatgaccccctgtggctaggcaaacag 320
Query: 121 gaacccactagctcatccaaacacgtctgcaaccgtgctgtgtttagtgcatgagtgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacccactagctcatccaaacacgtctgcaaccgtgctgtgtttagtgcatgagtgact 380
Query: 181 gtcacacaccttttccagaacggctctctgtttggctccattgtctgggatgacccttga 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcacacacctcttccagaacggctctctgtttggctccattgtctgggatgacccttga 440
Query: 241 ccttcttctgctcctccccctcatacctcccaggtgagtgctgctggaccctcagatggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttcttctgctcctccccctcatacctcccaggtgagtgctgctggaccctcagatggg 500
Query: 301 agcatgctggggacagtggaagctgatagtgagggaacaaagcagagtggtcagattaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcatgctggggacagtggaagctgatagtgagggaacaaagcagagtggtcagattaag 560
Query: 361 cccaaggacaggcaggggtgacttgaaagtccctccttgcgcacagccgagggccccaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccaaggacaggcaggggtgacttgaaagtccctccttgcgcacagccgagggccccaca 620
Query: 421 gctattggtcaatatccattgacttgtgtcctctcctctctaactttaaggggggtcttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctattggtcaatatccattgacttgtgtcctctcctctctaactttaaggggggtcttt 680
Query: 481 gttgcataaagaagcgttactatgacaa 508
||||||||||||||||||||||||||||
Sbjct: 681 gttgcataaagaagcgttactatgacaa 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
