BAC Information

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BAC

Clone NameMSMg01-352D06
Chromosome13 (Build37)
Map Location 25,117,385 - 25,117,704
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430
Downstream geneDcdc2a, Nrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352D06.T7 (MSMg01no352_d06.b1)MSMg01-352D06.TJ (MSMg01no352_d06.g1)
ACCAG463389AG463390
length781845
length of high quality
(start - end)
323 (51 - 373)156 (83 - 238)
definitionCHROMAT_FILE: MSMg01no352_d06.b1 PHD_FILE: MSMg01no352_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:39 2005CHROMAT_FILE: MSMg01no352_d06.g1 PHD_FILE: MSMg01no352_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACTCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACCTTATTTCCAATTCATCCATGAGTACCAGAGCGCATTT
CATTTGGAGGGACAATTTTAACAAAGTTGAACGCCTCAGGCAAACTATGA
TTGGCGGCAACTGTTTATTTCAAAAGCAAACTGGGGTTTCAGTCCCATAT
GAAGACATGGTCGGTGTTGAGATAATGCATATGCCGATTACTCGGATCTG
ATGGACTTTGCATCTCTCGTAAACAAACTGAATATACCACTGTATCCCAT
AGATGTGTACACTTGTTAAGTGCCAGCTAATGGCATCTTAAGTCACTTAG
AGCTTGTATATGTGGTAGCAGGGCTGTGGCTGCTGCTTACTGGTAAAGAG
TCTACCTAGCCTGCATAACCCCCCGGTTCAATTCCCAGCATCTTTCTTAC
TCTCTCACCTATTATAATCCCATATGCCTTACTGATCATGCTCCTTCCTG
TCCCACGTGCCGACATTTTTTTCTTCTCTCCTACCTCTCTCTTTCTTCTT
TACATCTTCCTTTTTCCCCTTCCTCGCCCCTTACTCCGCCTTTCCCCTTC
CCCCATTTTTTCTTTCTCCCCACTCCCTCCTTTTTTTTTCCCTTCTTTCT
CCCTATTTCCTCTTATTTTTATCTCCCTCTCTTTTCCCCTTTTTCCCCCT
CTCCTTATTTATATACATCCCTCCTACTAGATACCATCTCCCATCTACTT
CCTTTCCCTTATTATCTAATCTCTTATCTTN
CTTCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGAATTTTGGTTTCTTT
AAGAAAAAACAGAAATATTTTAAGAATATGTTTTCATTTTAATCCCAGGA
GTAGGGACATAGGTCAACTTTGCAACAACTAACTATGATTGGCCTTGTGC
TCTAGCAGAAGCATGATTTTGCCAGCTTCTGTGATTGCATGATGCTCGGC
GTTCTGACAACTTTTCCTAGTTTTTCCTTCTATTACCCTCTTACATCTGT
CGCTTCCTTACTCCTTTATTATCTCATTCCTTTTATCTCCCTATTTTTCT
CTTTCTTCTCTCCCCCTATTCCCTCCCGTTTTTTCCCTTTATTCCCCCTA
TATCCTTCTTTCTTTTTTTCCCTCTTTCCACTTTCTTTTCTTCCCCTTTC
CCCTTATTCCCTTTTTTTCCTTCCGCCTTTTCTTATACCCCCTTTTTTCC
TCCTTCCTTCTTCCCCACTCCTCCCTTTTCGTATTCCCCTCCTCCCCCTT
TTTCTTCTCACCTATTTCTTCTTCATATCCCCTTTATTACCTATCCCCTA
TTCCCCCCCCTTCTCCTCTTTTCCTTATTTTTCTTTTCCCTTACCCCCCT
TTTTCTTCCCCTTCTGTTCCCTCCTTTTCACTTTTCTTTCTCCCCTCCTT
TTCTTTCCCTCAACTTTTTATTTTCTCCCCCCTCTCCCCACTTTTTCCCC
TCAATCTCTTTATCTTTCTCCCCCTCCCCTTTCTTTCTTTTTTCCCACGC
TTTATCCAATACTCTTATCCCATTTTACCCATACTTCTTTATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_d06.b1 MSMg01no352_d06.b1 CHROMAT_FILE:
MSMg01no352_d06.b1 PHD_FILE: MSMg01no352_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:39 2005
         (323 letters)



>mm_chr13_25117182_25117904
          Length = 723

 Score =  549 bits (284), Expect = e-161
 Identities = 311/322 (96%), Gaps = 5/322 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacctta---tttccaattcatccatgagtaccagagcgcatttcatttggaggg 61
           ||||||||||||   ||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaccttaaagtta--aattcatccatgagtaccagagcgcatttcatttggaggg 261

                                                                       
Query: 62  acaattttaacaaagttgaacgcctcaggcaaactatgattggcggcaactgtttatttc 121
           |||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 262 acaattctaacaacgttgaacgcctcaggcaaactatgattggctgcaactgtttatttc 321

                                                                       
Query: 122 aaaagcaaactggggtttcagtcccatatgaagacatggtcggtgttgagataatgcata 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 322 aaaagcaaactggggtttcagtcccatatgaagacatggtcggtgttgagacaatgcata 381

                                                                       
Query: 182 tgccgattactcggatctgatggactttgcatctctcgtaaacaaactgaatataccact 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgccgattactcggatctgatggactttgcatctctcgtaaacaaactgaatataccact 441

                                                                       
Query: 242 gtatcccatagatgtgtacacttgttaagtgccagctaatggcatcttaagtcacttaga 301
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 442 gtatcccatagatgtgtacacttgttaagtgccagctaatggcgtcttaagtcacttaga 501

                                 
Query: 302 gcttgtatatgtggtagcaggg 323
           ||||||||||||||||||||||
Sbjct: 502 gcttgtatatgtggtagcaggg 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)