BAC Information

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BAC

Clone NameMSMg01-353G09
Chromosome13 (Build37)
Map Location 18,091,254 - 18,091,587
singlet/doubletsinglet
Overlap genenone
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik
Downstream geneVdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2, Vps41, Amph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353G09.T7 (MSMg01no353_g09.b1)MSMg01-353G09.TJ (MSMg01no353_g09.g1)
ACCAG464285AG464286
length776791
length of high quality
(start - end)		348 (49 - 396)451 (80 - 530)
definitionCHROMAT_FILE: MSMg01no353_g09.b1 PHD_FILE: MSMg01no353_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:16 2005CHROMAT_FILE: MSMg01no353_g09.g1 PHD_FILE: MSMg01no353_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACAGTTAGAGCATTTATTTTTCTTTCAGAAGACCTGGGTTC
AAATCCAAGAACCCACATGGTAGCTCACAACCATCTATACTTACAAGGAA
TCCAATGCGCTCTTCTGGCCTGAGAACACATACGTAAAAGATAGAAATAT
TTTTTAAAAACCAAATTTCAATTACATTAAAATGGGCAGTGAAGAGGTTT
GCAAGCCTAGTCCCTGCACTTAGGAAAAAAAGACAGGAGGATCAGAAGTT
CAAGGTCAGCTTTGGCTACATCCCAAATTAAAGACACATGAGGCCTTGTC
TTGGGGGGAGGGGGTGTTGCGCGGGGAGGGGGTGGGGACAGATGTTGNNT
ATTANTAATAAATCTCCTTATGTTATATAGGAGTTAGGGTCTCCTCCGCA
TTTCACACCACCTTGCCTTTATTCCCCCCTTTTATTATATTCTCCCATAT
CCATCCTCCCCTTCCTATATTTATCCTATTTCTCCCCTTCTTCTTTTTCT
ACCCCCTTTTCCCCTTTTGTTCTTTATTTACACTCTACCCCCCCCCATTT
CTTCCTTTCCTCCCCCCCCTTTTTTCCCCCACCCCTACTACCTACCCCCC
TTTTTCCCATCTCCCCGCCCCCATCCGTTTCCCTACCCCCCCCTTTTCCC
TCTCCTTCCCCACCCCACCCGTTTCCCTTACCTTTCCTTTTTTCACCCCA
TCTCCCCCTTTTCTATTCCCCTTTCT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGGCCACATGAAGCTCAAG
AAGGAAGACCAAAGTGTGGGTATTTCAGTCCTTCTTAGGAGGAAAACAAA
ATACTCACAGGAGGAAATATAAAGATAAAGTATAGAGCAGAGACTGAAGG
AAAGACTACCCAGAGACTGTCCCACCAAGGGATAAATCCCACATACAGTT
TTCAAACCCAGACACTATTGTAGATGCCAAGAAGTGCATGCTGACAGGAG
CCTGATATAGCTGTCTCCTGAGAGGCCCTGCCAGAGCCTTACAGAGCCCA
TCTCACTGGTTTAGAACACAAAGCCTTATCTAATGAATAATCTGGAACTT
GGGACTTCTTTTTCTACTGCTGTGTTCAGTCACACAGCAAACGACCTGGG
GCTTCCCAAGTCTCAGAGTTCCGAGAGAAGCATGCAATAGCTGCAGCTAG
AGGAGAGAGAGTTCCAAGAGAAGCATGCAGTAGCTGCAGCTAGAGGAGAG
AGGGCACTGGGGCTTTTTGCTTACTTGGAAATCCGAAGAAATTCTAACAA
CCCTCTTTACGAATCCGAGCCTTCCCTTCCTGTTTTTTTAAAGATGTGGT
CCTCCTTCCTCCCCGCTTGTCCGAATGGTCCAACCATGCACGGCCTATAT
ATCTGTGCCCTTATTTTGTGCGTTGCAAACTTCTTCGTTCCTTTCCCCCC
CCCGTGTATTCCCTCCCCTTTATCTTGGCGTTCTTCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_g09.g1 MSMg01no353_g09.g1 CHROMAT_FILE:
MSMg01no353_g09.g1 PHD_FILE: MSMg01no353_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:16 2005
         (451 letters)



>mm_chr13_18090737_18091587
          Length = 851

 Score =  630 bits (326), Expect = 0.0
 Identities = 332/334 (99%)
 Strand = Plus / Minus

                                                                       
Query: 118 aaggaaagactacccagagactgtcccaccaagggataaatcccacatacagttttcaaa 177
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 851 aaggaaagactacccagagactgtcccaccaacggataaatcccacatacagttttcaaa 792

                                                                       
Query: 178 cccagacactattgtagatgccaagaagtgcatgctgacaggagcctgatatagctgtct 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 cccagacactattgtagatgccaagaagtgcatgctgacaggagcctgatatagctgtct 732

                                                                       
Query: 238 cctgagaggccctgccagagccttacagagcccatctcactggtttagaacacaaagcct 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cctgagaggccctgccagagccttacagagcccatctcactggtttagaacacaaagcct 672

                                                                       
Query: 298 tatctaatgaataatctggaacttgggacttctttttctactgctgtgttcagtcacaca 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tatctaatgaataatctggaacttgggacttctttttctactgctgtgttcagtcacaca 612

                                                                       
Query: 358 gcaaacgacctggggcttcccaagtctcagagttccgagagaagcatgcaatagctgcag 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gcaaacgacctggggcttcccaagtctcagagttccgagagaagcatgcaatagctgcag 552

                                             
Query: 418 ctagaggagagagagttccaagagaagcatgcag 451
           ||||||||||||||||||| ||||||||||||||
Sbjct: 551 ctagaggagagagagttccgagagaagcatgcag 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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