BAC Information

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BAC

Clone NameMSMg01-353L12
Chromosome13 (Build37)
Map Location 55,088,626 - 55,223,322
singlet/doubletdoublet
Overlap geneUnc5a, Hk3, Uimc1, LOC622707, Zfp346
Upstream geneDrd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17
Downstream geneFgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353L12.T7 (MSMg01no353_l12.b1)MSMg01-353L12.TJ (MSMg01no353_l12.g1)
ACCAG464529AG464530
length781773
length of high quality
(start - end)		435 (50 - 484)245 (82 - 326)
definitionCHROMAT_FILE: MSMg01no353_l12.b1 PHD_FILE: MSMg01no353_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:40 2005CHROMAT_FILE: MSMg01no353_l12.g1 PHD_FILE: MSMg01no353_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,088,626 - 55,089,056)(55,223,078 - 55,223,322)
sequence
NNNNCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTGGAACATGTGGGCAGGGATAGCATGCAGATGCCCACCA
CAGGGGCTATGGAGAGAGAAGCCAGCTCTGACCACCCAGTCAGCACCCTC
TGTCCATAGAGGATATAGCTTAAATTTACCACTCACCCATAAGTGTCCTT
GATAGAGGGCAGGGTTGCAGCCTAGAGGGTCCCCCTGGGGCCTCCTGATA
AATACCCTCACCCCAGAAGTGGGAGGGAGGCCACAGCAGAGTGGCGTGAC
GGAGGCCCTGGAGAAGTGAGCTATGTCCCTTATTGGTCACAGTACATTTA
TTTTTCATTAGCAGTTAAATGCAGACATGAGGGATTGTACTGGGTTCAGC
GGGCGGCTGACGTGAGTAGGACTTGCTGCGCTGATCGATAGAGAGGCGGG
AGGCTGGNGCACCCACTCTCTGCCTCACATCCCGCAGGGGGATCCGTGCC
CATCCAGCTCTGAGCAGAGAGACAGGCACCCAGCTGTGATGCTGAACCTC
TGCCCAGGAATCGGGAAGCGGAAGCCCTATCCCAACCCGCCCCCTACCGG
GTCCCTGCCTTCGGGGTTAGCTTGGTCTTTTTTGGGGGGTTGCCCGGGGC
AACAAACGAAATAGCTGTGCCCCGGCTTTGTTTATTTTTGGGCACCAACC
TCTTTTTCCCCCTTTTGCTTCTCCTTCCCCCTTATTAAACTAGCTTTCTG
TCGAGTCCTCCCCCCCATCCCCTTTTCTCCC

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGGAATTCAAAGCAGGT
AGGGTAAGAAGGATAAAAATATTTCATCTCCATCCTCAAATACCTATTAT
AGAGCTGAAGTAGGCATTGGCGCTCTGAGCCTGTACAAACAAAAGCAGGC
AAGCAGATTAGGAATGCCTTCTATTATTTATTTAGTTGTAGTTTTTCTGA
GGGTCTCACTATGTAGCTCCCTGGCTGGTCTAAAATTCAAGATATAAACC
AGGCTGGGATTAAAGTGTGTGTCACCATTTTTTGGCCAAGATGCCTGTTA
GACCATACTAAATTCTAGCCAATGTGAGGGACAAGACACATTTTGTAATC
ACAGTTTCCCTTTAGGTTCTCAGAAGTACTCCAATGAAGGAGGTACCATT
TTGCCATATCACAGGGAAGACCAGTGCTTAGACAGCAAAACTGATTTGCT
CAAGATCACCAAGTTAGTGAGAGACTTCTAGACCGTGGGACCCCCAGGCT
CATGACAGAAGCTAGTGGATCTGCCAGCTACCACTGTCAATTTCGCCTTC
AGAAAACGGTCCGATCCTGTTTTCAGAATCCCTTTAATCTCGGGATGGAG
AGACTTGCGTCACCGTTTTATAAACGTCTTCGCCTTTTCCCCAAATCCGG
ACTCCTTTCCCCATCCCCTCCGTTCGTGGCCCCTTACCTCCCCTATTTCC
TTCCCTATGGCCTTCCTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_l12.b1 MSMg01no353_l12.b1 CHROMAT_FILE:
MSMg01no353_l12.b1 PHD_FILE: MSMg01no353_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:40 2005
         (435 letters)



>mm_chr13_55088422_55089256
          Length = 835

 Score =  820 bits (424), Expect = 0.0
 Identities = 429/431 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctggaacatgtgggcagggatagcatgcagatgcccaccacaggggctatgga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctggaacatgtgggcagggatagcatgcagatgcccaccacaggggctatgga 264

                                                                       
Query: 65  gagagaagccagctctgaccacccagtcagcaccctctgtccatagaggatatagcttaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagagaagccagctctgaccacccagtcagcaccctctgtccatagaggatatagcttaa 324

                                                                       
Query: 125 atttaccactcacccataagtgtccttgatagagggcagggttgcagcctagagggtccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttaccactcacccataagtgtccttgatagagggcagggttgcagcctagagggtccc 384

                                                                       
Query: 185 cctggggcctcctgataaataccctcaccccagaagtgggagggaggccacagcagagtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctggggcctcctgataaataccctcaccccagaagtgggagggaggccacagcagagtg 444

                                                                       
Query: 245 gcgtgacggaggccctggagaagtgagctatgtcccttattggtcacagtacatttattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcgtgacggaggccctggagaagtgagctatgtcccttattggtcacagtacatttattt 504

                                                                       
Query: 305 ttcattagcagttaaatgcagacatgagggattgtactgggttcagcgggcggctgacgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcattagcagttaaatgcagacatgagggattgtactgggttcagcgggcggctgacgt 564

                                                                       
Query: 365 gagtaggacttgctgcgctgatcgatagagaggcgggaggctggngcacccactctctgc 424
           |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 565 gagtaggacttgctgcgctgatcgatagagaggcaggaggctggggcacccactctctgc 624

                      
Query: 425 ctcacatcccg 435
           |||||||||||
Sbjct: 625 ctcacatcccg 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_l12.g1 MSMg01no353_l12.g1 CHROMAT_FILE:
MSMg01no353_l12.g1 PHD_FILE: MSMg01no353_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:40 2005
         (245 letters)



>mm_chr13_55222964_55223608
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggaattcaaagcaggtagggtaagaaggataaaaatatttcatctccatcctcaaat 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 359 catggaattcaaagcaggtaggataagaaggataaaaatatttcatctccatcctcaaat 300

                                                                       
Query: 61  acctattatagagctgaagtaggcattggcgctctgagcctgtacaaacaaaagcaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 acctattatagagctgaagtaggcattggcgctctgagcctgtacaaacaaaagcaggca 240

                                                                       
Query: 121 agcagattaggaatgccttctattatttatttagttgtagtttttctgagggtctcacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 agcagattaggaatgccttctattatttatttagttgtagtttttctgagggtctcacta 180

                                                                       
Query: 181 tgtagctccctggctggtctaaaattcaagatataaaccaggctgggattaaagtgtgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tgtagctccctggctggtctaaaattcaagatataaaccaggctgggattaaagtgtgtg 120

                
Query: 241 tcacc 245
           |||||
Sbjct: 119 tcacc 115


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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