NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTGTGTTGTGTATGAAGTGTGTGTGTATATATATATATATA
TGTATATGTATATATATACATATATATATATATATATATATTTATGTGTA
CCTCTGTGTGTGTGTGTATGTGTGTACACATGTCTGTGTATGCTCATGTG
TGTAGAGGCAAGAGGCCAATGTCTGGTGTCTTTCTAGGTCACTCTCCACC
TTATGTTTTGAGATAAAATGTGTCCTTGTACCTGGCGCTCACTGATTGGC
TAGGTTGAACAGCAAGCTCTGGAGAGCCACATGTCATTTCTGACCAAATG
CTTGGGTTACAGATACCAGCGTCCATGCCGGGCTTTTTCTATATATACTT
GGTATGTGCTTGTCTGAACTCAGGCAGCCAGCACTTTATGGATGGAGCCA
TCCNGTATATCNCACCCTGTAGCACATATTCTTGTGTCCTTAANAAAAAG
TCTTATGTCNCTTTGCCGTGTTTCTGTACAATTTCACAATTTCAATGGCC
TGACTTGTGTAAACTGCTTATAGTCTCCCTCCCCTCTCTACCCTNTTTTT
TCTTGCTNNNNTGTCCTTCTTCTNTGCTTTTTTCTTTTTTTCCGTCCNNT
CCTCCTCNNAATTCTTTTGTCCCTTTTTTTATTTATNCCTCTCTGTTNTT
CTCNCATTGNCTTCTTATGNCCTTTTCTCTTCTTAACNCCTCTCTTTTTT
TTTTTCC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTGGGATGGAAAAACTCAATA
ACCCTAGTAGAGAACTAAGGGAAAGCTTTTCAAACAGAATGAATCAAACA
AAAGGCAGAATATTGGAACTCAAAGATTAAGTAGAGGAACTAGATGAAAT
AAGAAAAAAATGGGAAAAGGCTATGCAGGAAATATGGACACCATGAAAAG
ATCAATCCTAAAGTTATAGGACTAGATAAGGGAGAAGAATCCCAGGTCAA
CAGCATGGACCAAATGTTCAACAAGATCATAGAAAAAAACCTTCCCAATC
TAAGGAAAGACAGACCTATACAGATACAAGAAGCACACAGAACACCAAAT
GGAGAAGACAATGGGGGAAAAAACCCTCCCCACAACATAGTTGTCTTCGT
TAAGTGTTTGAAGTACCCATGAAACATGTTAAGCTGACTGTGGGATTGTG
GAGTCACAGAAATGAGAGACTCATCGTTTTAAGGAGAGTATATCAGACTG
GACCATATAAACACAGGAAGCATAGGATGGGGACTGGGCCACTGGAATTA
ACAGCAGTCACTGGGTAACCTTGGCTGGAGCAGTGGAGTACAGGCATACA
CTGGGTGGTATATGTCAGTGAAGACGATACAACTTAAATTTTTGAGAAGT
CAAAATCTGGGTAAACAGTAGTATCCACAGCTCTTTTACAATTTGTGCGC
GAAAGGGG

Query= MSMg01no354_b17.g1 MSMg01no354_b17.g1 CHROMAT_FILE:
MSMg01no354_b17.g1 PHD_FILE: MSMg01no354_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:10 2005
         (576 letters)



>mm_chr13_103948275_103949250
          Length = 976

 Score =  992 bits (513), Expect = 0.0
 Identities = 564/581 (97%), Gaps = 6/581 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtgggatgg-aaaaactcaataaccctag-tagagaactaagggaaagcttttcaaa 58
           |||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||| 
Sbjct: 197 caggtgggatggaaaaaactcaataaccct-gctagagaactaagggaaagcttttcaag 255

                                                                       
Query: 59  cagaatgaatcaaacaaaaggcagaatattggaactcaaagattaagtagaggaactaga 118
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 256 cagaatgaatcaaacaaaaggcagaatattgggactcaaagattaagtagaggaactaga 315

                                                                       
Query: 119 tgaaataag-aaaaaaat-gggaaaaggctatgcaggaaatatggacaccatgaaaagat 176
           ||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| 
Sbjct: 316 tgaaataagaaaaaaaataggaaaaaggctatgcaggaaatatggacaccatgaaaagac 375

                                                                       
Query: 177 caatcctaaagttataggactagataagggagaagaatcccaggtcaacagcatggacca 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 caatcctaaagttataggactagataagggagaagaatcccaggtcaacagcatggacca 435

                                                                       
Query: 237 aatgttcaacaagatcatagaaaaaaaccttcccaatctaaggaaagacagacctataca 296
           |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||
Sbjct: 436 aatgttcaacaagatcatagaagaaaaccttcccaatctaaggaaagatggacctataca 495

                                                                       
Query: 297 gatacaagaagcacacagaacaccaaatggagaagacaat-gggggaaaaaaccctcccc 355
           |||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||
Sbjct: 496 gatacaagaagcacacagaacaccaagtggagaagacaatgggggggaaaaaccctcccc 555

                                                                       
Query: 356 acaacatagttgtcttcgttaagtgtttgaagtacccatgaaacatgttaagctgactgt 415
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 acaacataattgtcttcgttaagtgtttgaagtacccatgaaacatgttaagctgactgt 615

                                                                       
Query: 416 gggattgtggagtcacagaaatgagagactcatcgttttaaggagagtatatcagactgg 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gggattgtggagtcacagaaatgagagactcatcgttttaaggagagtatatcagactgg 675

                                                                       
Query: 476 accatataaacacaggaagcataggatggggactgggccactggaattaacagcagtcac 535
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 676 accatataaacacaggaagcataggatggggactggaccactggaattaacagcagtcac 735

                                                    
Query: 536 tgggtaaccttggctggagcagtggagtacaggcatacact 576
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tgggtaaccttggctggagcagtggagtacaggcatacact 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)