Query= MSMg01no354_h20.b1 MSMg01no354_h20.b1 CHROMAT_FILE:
MSMg01no354_h20.b1 PHD_FILE: MSMg01no354_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:39 2005
(496 letters)
>mm_chr13_14506160_14507055
Length = 896
Score = 903 bits (467), Expect = 0.0
Identities = 486/493 (98%), Gaps = 2/493 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgcttgtatgcaaattttttgaaataaaaataattggagagtccagtaccatc 63
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 572 ggaattctgcttgtatgcaaattttttgaaataaaaataattggagagtcaagtaccatc 513
Query: 64 attatattattttatttgataactttgctcatcactgtataataggagattatttttaac 123
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 512 attatattattttatttgataactttactcatcactgtataataggagattatttttaac 453
Query: 124 aaatacatattatttgtcaaatgttgcttattcacagatattgactgaatggataatcaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aaatacatattatttgtcaaatgttgcttattcacagatattgactgaatggataatcaa 393
Query: 184 gtctagacaacatgatgagcgcatgagatggaatgatgagccaattagcccctgtgtctc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtctagacaacatgatgagcgcatgagatggaatgatgagccaattagcccctgtgtctc 333
Query: 244 tgtctcctaacaaaagagggaactgacttaagttataaccattatggttataacaggaac 303
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtctcctaacaaaagagggaactggcttaagttataaccattatggttataacaggaac 273
Query: 304 tcttcactatgagcacatgctgggaggggtgtgtttacctgaaatggagttcaggaagtt 363
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 272 tcttcactatgaggacatgctgggaggggtgtgtttacctgaaatggcgttcaggaagtt 213
Query: 364 tgacagatgattttttttttattattattattttagggcactgaaatgtggcttgtagcc 423
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tgacagatga--ttttttttattattattattttagggcactgaaatgtggcttgtagcc 155
Query: 424 agtcaagtagaagagagggttcattttccttattggaaaagtgatacttccaagtgaccc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 agtcaagtagaagagagggttcattttccttattggaaaagtgatacttccaagtgaccc 95
Query: 484 ttaaatatccata 496
|||||||||||||
Sbjct: 94 ttaaatatccata 82
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_h20.g1 MSMg01no354_h20.g1 CHROMAT_FILE:
MSMg01no354_h20.g1 PHD_FILE: MSMg01no354_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:39 2005
(420 letters)
>mm_chr13_14339719_14340538
Length = 820
Score = 725 bits (375), Expect = 0.0
Identities = 409/421 (97%), Gaps = 4/421 (0%)
Strand = Plus / Plus
Query: 1 ctcatccaaatattctaggtcactcagatcacatggcctgcgagaattcaaaggcagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcatccaaatattctaggtcactcagatcacatggcctgcgagaattcaaaggcagcaa 260
Query: 61 gaaaagttgagtaaacaaatatggtttccatactccattccaaacatgattgtttggctt 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaagttgagtaaacaaatgtggtttccatactccattccaaacatgattgtttggctt 320
Query: 121 ctcaataaagcatcataggtttcacaattacttg-gtacttttgaatgtattgaggaaac 179
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 321 ctcaataaagcatcataggtttcacaattacttgag-acttttgaatgtattgaggaaac 379
Query: 180 agtaattgaatacttttaatttatttaatagtttccttttgaaaagaaactgctaaaatt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agtaattgaatacttttaatttatttaatagtttccttttgaaaagaaactgctaaaatt 439
Query: 240 tcaataataaacatgaaataattattgactcacaggtgcctaaaaaacaaaccaattcta 299
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 440 tcaataataaacatgaaataattattgactcacaggtacctaaaaaacaaaccaattcta 499
Query: 300 ctcaactgcttaatacaatgttcccaatgttatgatttctacataaatgaattaatgtcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctcaactgcttaatacaatgttcccaatgttatgatttctacataaatgaattaatgtcc 559
Query: 360 atttggttttgctaatttctttttttttttttcaagacagggtttctctctgcagccctg 419
||||||||||||||||| |||||| |||||| ||||||||||||| | || |||||||
Sbjct: 560 atttggttttgctaattcctttttcttttttg--agacagggtttctttgtgtagccctg 617
Query: 420 g 420
|
Sbjct: 618 g 618
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
