Query= MSMg01no354_j21.b1 MSMg01no354_j21.b1 CHROMAT_FILE:
MSMg01no354_j21.b1 PHD_FILE: MSMg01no354_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:49 2005
(506 letters)
>mm_chr13_29885580_29886485
Length = 906
Score = 874 bits (452), Expect = 0.0
Identities = 485/505 (96%), Gaps = 18/505 (3%)
Strand = Plus / Plus
Query: 5 gaattctttcttt--gtaccagagaagacctatgtaaatcaagcaaccccaagaagggta 62
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaatcctttctttgagt--cagagaagacctatgtaaatcaagcaaccccaagaagggta 262
Query: 63 gaaaagattgggaagggaaggtggtcaatgggcc-tcctaaatctgagtcctagacgaaa 121
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 263 gaaaagattgggaagggaaggtggtcaatgggccctcctaaatctgag-cctagacgaaa 321
Query: 122 caacagagaaggtatctgctatgggtgagaagagctgccaggaggctttcacttgttgac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caacagagaaggtatctgctatgggtgagaagagctgccaggaggctttcacttgttgac 381
Query: 182 agaagctacaatgaattcaagttcatattgggtcagaaatgtccatacatgtacacatac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agaagctacaatgaattcaagttcatattgggtcagaaatgtccatacatgtacacatac 441
Query: 242 atgtacacatacatgtacacattccttgatctgccattgagtgtctaaaggaaaaggaga 301
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atgtacacat------------tccttgatctgccattgagtgtctaaaggaaaaggaga 489
Query: 302 tccactacctggtacatctagcccacagtacttagtttccatggaaaggaaacacctcct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tccactacctggtacatctagcccacagtacttagtttccatggaaaggaaacacctcct 549
Query: 362 cttgggaaaagaactgattaagtacctgggtgggaaatacaaaagatgaggtggaatgtg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cttgggaaaagaactgattaagtacctgggtgggaaatacaaaagatgaggtggaatgtg 609
Query: 422 gnataatgcaaagcaatatactaagccactactggataataaccaagtatacaattaata 481
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gtataatgcaaagcaatatactaagccactactggataataaccaagtatacaattaata 669
Query: 482 ggcatcggcaggcacaatacttcag 506
|||||||||||||||||||||||||
Sbjct: 670 ggcatcggcaggcacaatacttcag 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_j21.g1 MSMg01no354_j21.g1 CHROMAT_FILE:
MSMg01no354_j21.g1 PHD_FILE: MSMg01no354_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:49 2005
(459 letters)
>mm_chr13_30063279_30064137
Length = 859
Score = 833 bits (431), Expect = 0.0
Identities = 452/459 (98%)
Strand = Plus / Minus
Query: 1 cttatcctatgtggctttataactaatgaggaatagatactcacttctgttactgtttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cttatcctatgtggctttataactaatgaggaatagatactcacttctgttactgtttct 600
Query: 61 gatgcattttgtgcactgtggctcacgatgaggtgaggggccttaaaccagtgttagcac 120
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 599 ggtgcattttgtgcactgtggctcacgatgaggtgaggggccgtaaaccagtgttagcac 540
Query: 121 gttggaacttctgaatgtttccccttgtgggaccccaagacctattgagtcaaaaacttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gttggaacttctgaatgtttccccttgtgggaccccaagacctattgagtcaaaaacttg 480
Query: 181 agtgtcggagccaatagctgatttgatgaccagttttgagagccagtatttggggagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 479 agtgtcggagccaatagctgatttgatgaccagttttgagagccagtgcttggggagaaa 420
Query: 241 ccaaggggctttgattgggctgtggtattctgtggtatcaagtaagtgttgcttgtgtgg 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 419 ccaaggggctttgattgggctgtggtattctgtggtatcaaataagtgttgcttgtgtgg 360
Query: 301 tgattctagcctcagagtttacatacgtgactattgttccggtaattcaagatggcagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgattctagcctcagagtttacatacgtgactattgttccggtaattcaagatggcagca 300
Query: 361 ctttgtaggcgcgtccttgtatggaccaaccatggtttaggtgggatgactgggagggtt 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 299 ctttgtaggcgcgtccttgtatggaccaaccatggtttacgtgggatgactgggagggtt 240
Query: 421 ccagctaacagaaattctttgtctttcattggcttttca 459
||||||||||||||||||| |||||||||||||||||||
Sbjct: 239 ccagctaacagaaattcttggtctttcattggcttttca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
