BAC Information

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BAC

Clone NameMSMg01-354L07
Chromosome13 (Build37)
Map Location 54,678,136 - 54,678,649
singlet/doubletsinglet
Overlap geneArl10
Upstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik
Downstream geneD13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354L07.T7 (MSMg01no354_l07.b1)MSMg01-354L07.TJ (MSMg01no354_l07.g1)
ACCAG465269AG465270
length734771
length of high quality
(start - end)		518 (53 - 570)70 (78 - 147)
definitionCHROMAT_FILE: MSMg01no354_l07.b1 PHD_FILE: MSMg01no354_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:56 2005CHROMAT_FILE: MSMg01no354_l07.g1 PHD_FILE: MSMg01no354_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTGTCCTTTGGCTCAAGAAGAGACAGAGAAAGCTTGAT
GGGTGGTCCTAAGTAAAGATCAATGTTTGCTACGACCTGGGAGAAAAGGT
ATGGCCAGGCGTGACCAGACCACAAATGCTTAAGAACGAGACCCACTCAG
GCTAAGAGTTCGGCTCTCAAAGCTCAACTCTATCCCTAGTGCTTAAATAA
GCACACCCAGGCTTCACAGTTTTAGTCCTGTGCCTCGAAGTCCCTCCTAA
CTCCTCAGAGACTGAGGCTAGACCCAGGTGGAGAAGTCCAAAATCCCAAG
ACTCCTACATCTACAGGTAGGGCTCCTCAGTCGCCTCTCAGACCACTCAC
TCAATAAGCCCCCTCGGGTACCTATTAGAGGGCTGAGCCTTTGGGCCAGA
AATGGATCATATACTCTGTGACCACAGTGTTCCTGGCCTCATCAGGGACA
GAGGGTGAGTGACAAATCCTGCAGCAGGAGGGGACCAGAGTCAGGCAGAG
GCCAGACTTCAAAGGTAAGCTTTCAAAGATGTCATTTCGCAATCACACTT
GAAGCTTTGATTGTTGGCGGGTGTACCTGGNACCCTAGCACTCACATGGT
GCAGAAATGAATTGTCAAGTGGCCAATGACCACTCTCNATGTCTTGAAAT
CATTCTCAAACAAATGAACAAAACCCCGAACTAA

NNNCCCATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGCTAAAACCATCTGGCCCTG
GGCTTTTGTGGTTTTTGGTTGTTTGTTGGATGATTGGTTGGTTGGTTGGT
TGGGGGATTNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTCTTTNTTNTNNTTTTTTTTTTTTTNTTTTTTTTTTTTTTTT
TTTTCCCCTTNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTCTTT
TTTTTATTTTCTTTTTTCCCCCCCCCCCCCCCCCCCCACTCCCCCCCCCC
CCCCCCTCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCC
CCCTCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCTCCCCCCCTCCCCCCCCACCCCCACTCCCACTCTCCA
CTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCAC
CCCCCCACCCACCCCCCCCCCACCCTACCCCTTCCCCCCCCTCCCCCCCC
ACCCCCCCCTCCACCACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_l07.b1 MSMg01no354_l07.b1 CHROMAT_FILE:
MSMg01no354_l07.b1 PHD_FILE: MSMg01no354_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:56 2005
         (518 letters)



>mm_chr13_54677932_54678849
          Length = 918

 Score =  978 bits (506), Expect = 0.0
 Identities = 512/514 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgtcctttggctcaagaagagacagagaaagcttgatgggtggtcctaagtaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gaattcctgtcctttggctcaagaagagacagagaaagcttgatgggtggtcctaagtaa 659

                                                                       
Query: 65  agatcaatgtttgctacgacctgggagaaaaggtatggccaggcgtgaccagaccacaaa 124
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 658 agatcaatgtttgctacgacctgggagaaaaggtatggccaggcatgaccagaccacaaa 599

                                                                       
Query: 125 tgcttaagaacgagacccactcaggctaagagttcggctctcaaagctcaactctatccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tgcttaagaacgagacccactcaggctaagagttcggctctcaaagctcaactctatccc 539

                                                                       
Query: 185 tagtgcttaaataagcacacccaggcttcacagttttagtcctgtgcctcgaagtccctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tagtgcttaaataagcacacccaggcttcacagttttagtcctgtgcctcgaagtccctc 479

                                                                       
Query: 245 ctaactcctcagagactgaggctagacccaggtggagaagtccaaaatcccaagactcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ctaactcctcagagactgaggctagacccaggtggagaagtccaaaatcccaagactcct 419

                                                                       
Query: 305 acatctacaggtagggctcctcagtcgcctctcagaccactcactcaataagccccctcg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 acatctacaggtagggctcctcagtcgcctctcagaccactcactcaataagccccctcg 359

                                                                       
Query: 365 ggtacctattagagggctgagcctttgggccagaaatggatcatatactctgtgaccaca 424
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 358 ggtacctattagagggctgagcctttgggccagaaatggatcatacactctgtgaccaca 299

                                                                       
Query: 425 gtgttcctggcctcatcagggacagagggtgagtgacaaatcctgcagcaggaggggacc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gtgttcctggcctcatcagggacagagggtgagtgacaaatcctgcagcaggaggggacc 239

                                             
Query: 485 agagtcaggcagaggccagacttcaaaggtaagc 518
           ||||||||||||||||||||||||||||||||||
Sbjct: 238 agagtcaggcagaggccagacttcaaaggtaagc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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