BAC Information

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BAC

Clone NameMSMg01-355A21
Chromosome13 (Build37)
Map Location 54,578,764 - 54,746,603
singlet/doubletdoublet
Overlap geneLOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8
Upstream geneEG432760, E130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3
Downstream geneRn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355A21.T7 (MSMg01no355_a21.b1)MSMg01-355A21.TJ (MSMg01no355_a21.g1)
ACCAG465534AG465535
length751767
length of high quality
(start - end)		592 (46 - 637)402 (77 - 478)
definitionCHROMAT_FILE: MSMg01no355_a21.b1 PHD_FILE: MSMg01no355_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:24 2005CHROMAT_FILE: MSMg01no355_a21.g1 PHD_FILE: MSMg01no355_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,746,015 - 54,746,603)(54,578,764 - 54,579,165)
sequence
TTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAAAACAACGTTAGAGACCCCATTCTCTCAATGTTCAATACTTA
CAGAATATGGCTAGTTCAATTTCCACGAGCCCACCCCTCTCTAGTGATTC
CTCTCTATTACAATGCTCTTCTTGACAGTCTCATTATTAAATGCTACTGC
TCTGGTATCTATCATTTCATCTAAGACTATTGTTCTTCACAGAATTTTTG
CTTTAAATCTTCATAACATTCTCAAACAACTATTTAGATTCATGGTCAAC
GATTTTCCCACATAACAAATATTCATTCTTTCCATCTTATATTTAGACTC
ACTATATGGCACATAGAAATAACAAGAGATAATTACCTTGCTTTGGACAC
TTGTATGCAACCACAAGACTCCACCACAAGGACATCCTCAGGTGTCTACT
AATCAACCTATCTTACTGCTCTCACACACAGACAGCTTCATGTCAGACTG
TGTCAAATGCCCTGCATGGTCATCGCAGTGGGCTCTAAAGCTAAATGGGG
ATCAGGGTCTCAAACACAAAGTGAGGTCCAGTCCAAGCTGAAGAAACATG
GGGACACAGGAAATTATTTCCTGAGTTATGGATTGCTGGAGGAAACTGGC
TTGTTTATTGCGTGTTTTTCCCTTTTGCTCTTGAAACCAGGTTTCCCTTT
GTATTCCCGGCTGTTCCACAAATCTCTGTTCCCCACTTATGCTTGCCCCC
C

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTCCTGGTTCAGTGTCAGGGT
CCCACAGAAGTCTGGTAAAAGGAAAGATAGTTTCCAGGGTGGGACGGGGT
TCCTTAGAGACTGTGGTCTTCCTTGCTTCCCACCCATTCCCTCTCCCTTC
TGAGGAGAGTTTGTCAGAGCCGTTGGCAGTCCTCCCAGGTAGGCTGGTGA
GTATAAAATAGTCTTGAGAAAAGGCGTTAAACCTTGAGGTTTGTCTTGAG
AAGGAAGGTTTGACTCTTCCGGTTATAAAATCGCTGGTAGAAACAGGAAC
ATAGACCATAAATGGAGCTATAGGAAGAATGTCATCATTCAACATTGCCT
GAGGCTTTCTTTGGGGAAGGTGAACAAGGACCTGAAAGGGTAACTGGTCT
GGAGGTCAGGCTATACATGGGTCCTGTAAGGACAAGTCAGCAGGGAGGAA
GCCTTGGATACGACTGAGAGCTGGAGGTAACACTTATTTGTCTCCCCTGG
TTCGCGTTAAAGACCTATGATACCTCCTCGCCCCTCTATGTTCTGATATT
TTTTGTCTGCGGCTTCGTCTGTCACCTAACCCCCAGTTCTTTTCTCTCTC
TCTCCCTCGTTAATTCCTCTCACTTTTTTTTGCTTTTGTCTTCGATCTCT
TTTGATTTTGACCCCCTCTTTTGTTTCTCCGCTTTTTTATATCTGAATTA
TTACTCTGTTCTCGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_a21.b1 MSMg01no355_a21.b1 CHROMAT_FILE:
MSMg01no355_a21.b1 PHD_FILE: MSMg01no355_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:24 2005
         (592 letters)



>mm_chr13_54745812_54746803
          Length = 992

 Score = 1108 bits (573), Expect = 0.0
 Identities = 585/589 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaaaaacaacgttagagaccccattctctcaatgttcaatacttacagaatat 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ggaattccaaaaacaaagttagagaccccattctctcaatgttcaatacttacagaatat 733

                                                                       
Query: 64  ggctagttcaatttccacgagcccacccctctctagtgattcctctctattacaatgctc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ggctagttcaatttccacgagcccacccctctctagtgattcctctctattacaatgctc 673

                                                                       
Query: 124 ttcttgacagtctcattattaaatgctactgctctggtatctatcatttcatctaagact 183
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 672 ttcttgacagtctcattattaaatgctactgctttggtatctatcatttcatctaagact 613

                                                                       
Query: 184 attgttcttcacagaatttttgctttaaatcttcataacattctcaaacaactatttaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 attgttcttcacagaatttttgctttaaatcttcataacattctcaaacaactatttaga 553

                                                                       
Query: 244 ttcatggtcaacgattttcccacataacaaatattcattctttccatcttatatttagac 303
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 552 ttcatggtcaacgattttcccacataacaaatattcattctttccgtcttatatttagac 493

                                                                       
Query: 304 tcactatatggcacatagaaataacaagagataattaccttgctttggacacttgtatgc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tcactatatggcacatagaaataacaagagataattaccttgctttggacacttgtatgc 433

                                                                       
Query: 364 aaccacaagactccaccacaaggacatcctcaggtgtctactaatcaacctatcttactg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaccacaagactccaccacaaggacatcctcaggtgtctactaatcaacctatcttactg 373

                                                                       
Query: 424 ctctcacacacagacagcttcatgtcagactgtgtcaaatgccctgcatggtcatcgcag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctctcacacacagacagcttcatgtcagactgtgtcaaatgccctgcatggtcatcgcag 313

                                                                       
Query: 484 tgggctctaaagctaaatggggatcagggtctcaaacacaaagtgaggtccagtccaagc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgggctctaaagctaaatggggatcagggtctcaaacacaaagtgaggtccagtccaagc 253

                                                            
Query: 544 tgaagaaacatggggacacaggaaattatttcctgagttatggattgct 592
           |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 252 tgaagaaacatggggacacaggaaattacttcctgagttatggattgct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no355_a21.g1 MSMg01no355_a21.g1 CHROMAT_FILE:
MSMg01no355_a21.g1 PHD_FILE: MSMg01no355_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:24 2005
         (402 letters)



>mm_chr13_54578564_54579365
          Length = 802

 Score =  754 bits (390), Expect = 0.0
 Identities = 399/402 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctctcctggttcagtgtcagggtcccacagaagtctggtaaaaggaaagatagtttcca 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctctcctggttcagtgtcggggtcccacagaagtctggtaaaaggaaagatagtttcca 260

                                                                       
Query: 61  gggtgggacggggttccttagagactgtggtcttccttgcttcccacccattccctctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtgggacggggttccttagagactgtggtcttccttgcttcccacccattccctctcc 320

                                                                       
Query: 121 cttctgaggagagtttgtcagagccgttggcagtcctcccaggtaggctggtgagtataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctgaggagagtttgtcagagccgttggcagtcctcccaggtaggctggtgagtataa 380

                                                                       
Query: 181 aatagtcttgagaaaaggcgttaaaccttgaggtttgtcttgagaaggaaggtttgactc 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatagtcttgagaaaaggcattaaaccttgaggtttgtcttgagaaggaaggtttgactc 440

                                                                       
Query: 241 ttccggttataaaatcgctggtagaaacaggaacatagaccataaatggagctataggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ttccggttataaaatcgctggtagaaacaggaacatagaccataaatggggctataggaa 500

                                                                       
Query: 301 gaatgtcatcattcaacattgcctgaggctttctttggggaaggtgaacaaggacctgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaatgtcatcattcaacattgcctgaggctttctttggggaaggtgaacaaggacctgaa 560

                                                     
Query: 361 agggtaactggtctggaggtcaggctatacatgggtcctgta 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggtaactggtctggaggtcaggctatacatgggtcctgta 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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