BAC Information

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BAC

Clone NameMSMg01-355D14
Chromosome13 (Build37)
Map Location 20,384,501 - 20,552,273
singlet/doubletdoublet
Overlap geneElmo1
Upstream geneTcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneLOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355D14.T7 (MSMg01no355_d14.b1)MSMg01-355D14.TJ (MSMg01no355_d14.g1)
ACCAG465662AG465663
length727742
length of high quality
(start - end)		482 (52 - 533)496 (82 - 577)
definitionCHROMAT_FILE: MSMg01no355_d14.b1 PHD_FILE: MSMg01no355_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:37 2005CHROMAT_FILE: MSMg01no355_d14.g1 PHD_FILE: MSMg01no355_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,384,501 - 20,384,974)(20,551,778 - 20,552,273)
sequence
NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTCTGAGCCTGCAAGGCAAACACCATCCTGCCTGTCAA
AATCTGAACTTGGAAGAACACTGAGAAGCTTGGATAAAATTTGATTTCTT
TGAATAAAGGTTGAATTTATAGAAAGAATATAATTTCTTATTTCGTTTCT
CCCAAGTAGACAGAGCCCAGGAAGCAGTAAGTTGATAGTTTCTTAGAGTC
CATGCAGGCCACATTTCAGCTTCTATTTCCCTGCTTCCAAGCCATGGGCT
AAGAAACCTGTCTTTTAATATATCTATGATTGGTTTCCTTGGCTGCAAAC
TGGTCACAGCTTTTTGTTTCAAATTTACCAAAGCAGACAGAGATCTTAGC
CACCCTGGAGCCCTCCTTCATTTTAGGAAGTACGTGTCTTGGAAACCACA
GGCAGAGTTTTGAGTTCAGAGTTCTCCAGAGGAACAGAGTAGTCCGTGGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTNNNNNNNTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTCTTTTTTTTTC
CTTTTTTNTTTTCTTTTTTTTTTTGTGTTTTTTTTTGCTCTTTCTTTCTT
TTTTTTTTCCCCCCCCCCCTCTCCTCTTTCTCTTTTCTTTCTCGTCTCTT
TCCTTCTTTTCTCCTTCCCTTTCCCCC

NNTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATTGTGGAGGCAGAGG
TGCAAAGCTTTGTACTGAATTGAACGGGAGATAGATGGTACCTCTCATAC
TGAGGTGGCACTTGTGCAAAATCCTAAAGGATAAGTAGGCTCTCGACAGG
CAGATGGGAGAAGACGTTTCTGGCAGAGAGAATGAGGATGAGCTAAGGCT
GAGAGATGAAAAGTGTTACAGCATGTACAAAAAAACAGTGGGCATTCAGG
ATGTGCTGGCAGCCTAGGAAAGGTGGGGAGTGAAAGCGAGGTAGAGGCAG
GAAAAGTATGTTACCGTGAAACTTTCAGAGCCAGGTAACAGCCAGCCTCA
GGAAGTCTAGAAGCAGGAATGATATGGTCAGATTTGATTTTGAAAACAAG
ATTTCAAAGATAGAAATTAAGTAATGTAACAGTTGGTATCTTAGTTATTC
CTATATAGATGCTGTGTAACAAGCAATCACAAAAGATTTTTATACTTCCA
GGTCTATAGGTGAGCTGAGATGGCTATTTGGTTATATCTTGACATTTCAA
AATGTCGGGTTGACTCTAGAAAACTGCACCCAGATGTGTTAATCCGGTTT
CTGCCCTGAATTATACAAATGCTGGCCCCTAATGACAGCTTCTTATTTAT
CTCTTCCCTTATAAAACCTATTTTCTCCCCTTTGGTGGGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_d14.b1 MSMg01no355_d14.b1 CHROMAT_FILE:
MSMg01no355_d14.b1 PHD_FILE: MSMg01no355_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:37 2005
         (482 letters)



>mm_chr13_20384297_20385178
          Length = 882

 Score =  870 bits (450), Expect = 0.0
 Identities = 468/474 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttctgagcctgcaaggcaaacaccatcctgcctgtcaaaatctgaacttggaa 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattctttctgagcctgcaaggcaaacaccatcctgcctgtctaaatctgaacttggaa 264

                                                                       
Query: 65  gaacactgagaagcttggataaaatttgatttctttgaataaaggttgaatttatagaaa 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaacactgagaagtttggataaaatttgatttctttgaataaaggttgaatttatagaaa 324

                                                                       
Query: 125 gaatataatttcttatttcgtttctcccaagtagacagagcccaggaagcagtaagttga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaatataatttcttatttcgtttctcccaagtagacagagcccaggaagcagtaagttga 384

                                                                       
Query: 185 tagtttcttagagtccatgcaggccacatttcagcttctatttccctgcttccaagccat 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 tagtttcttagagtccatgcaggccacatttcaccttctatttccctgcttccaagccat 444

                                                                       
Query: 245 gggctaagaaacctgtcttttaatatatctatgattggtttccttggctgcaaactggtc 304
           |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 445 gggctaagaaacctgtcttttaatatatctgtgattggtttccttggccgcaaactggtc 504

                                                                       
Query: 305 acagctttttgtttcaaatttaccaaagcagacagagatcttagccaccctggagccctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acagctttttgtttcaaatttaccaaagcagacagagatcttagccaccctggagccctc 564

                                                                       
Query: 365 cttcattttaggaagtacgtgtcttggaaaccacaggcagagttttgagttcagagttct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttcattttaggaagtacgtgtcttggaaaccacaggcagagttttgagttcagagttct 624

                                                                 
Query: 425 ccagaggaacagagtagtccgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 478
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcagaggaacagagtagtccgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no355_d14.g1 MSMg01no355_d14.g1 CHROMAT_FILE:
MSMg01no355_d14.g1 PHD_FILE: MSMg01no355_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:37 2005
         (496 letters)



>mm_chr13_20551578_20552473
          Length = 896

 Score =  936 bits (484), Expect = 0.0
 Identities = 493/496 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacattgtggaggcagaggtgcaaagctttgtactgaattgaacgggagatagatggtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 cacattgtggaggcagaggtgcaaagctttgtactgaattgaacgggagatagatggtac 637

                                                                       
Query: 61  ctctcatactgaggtggcacttgtgcaaaatcctaaaggataagtaggctctcgacaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ctctcatactgaggtggcacttgtgcaaaatcctaaaggataagtaggctctcgacaggc 577

                                                                       
Query: 121 agatgggagaagacgtttctggcagagagaatgaggatgagctaaggctgagagatgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 agatgggagaagacgtttctggcagagagaatgaggatgagctaaggctgagagatgaaa 517

                                                                       
Query: 181 agtgttacagcatgtacaaaaaaacagtgggcattcaggatgtgctggcagcctaggaaa 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 agtgttacagcacgtacaaaaaaacagtgggcattcaggatgtgctggcagcctaggaaa 457

                                                                       
Query: 241 ggtggggagtgaaagcgaggtagaggcaggaaaagtatgttaccgtgaaactttcagagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggtggggagtgaaagcgaggtagaggcaggaaaagtatgttaccgtgaaactttcagagc 397

                                                                       
Query: 301 caggtaacagccagcctcaggaagtctagaagcaggaatgatatggtcagatttgatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 caggtaacagccagcctcaggaagtctagaagcaggaatgatatggtcagatttgatttt 337

                                                                       
Query: 361 gaaaacaagatttcaaagatagaaattaagtaatgtaacagttggtatcttagttattcc 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gaaaacaagatttcaaagacagaaattaagtaatgtaacagttggtatcttagttattcc 277

                                                                       
Query: 421 tatatagatgctgtgtaacaagcaatcacaaaagatttttatacttccaggtctataggt 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 276 tatatagatgctgtgtaacaagcaatcacaaaagatttttatactcccaggtctataggt 217

                           
Query: 481 gagctgagatggctat 496
           ||||||||||||||||
Sbjct: 216 gagctgagatggctat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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