BAC Information

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BAC

Clone NameMSMg01-355E23
Chromosome13 (Build37)
Map Location 102,436,096 - 102,436,595
singlet/doubletsinglet
Overlap genenone
Upstream geneTaf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937, 4933416M06Rik, LOC100039971, LOC100039983
Downstream genePik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355E23.T7 (MSMg01no355_e23.b1)MSMg01-355E23.TJ (MSMg01no355_e23.g1)
ACCAG465728AG465729
length744802
length of high quality
(start - end)		696 (49 - 744)---
definitionCHROMAT_FILE: MSMg01no355_e23.b1 PHD_FILE: MSMg01no355_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:43 2005CHROMAT_FILE: MSMg01no355_e23.g1 PHD_FILE: MSMg01no355_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATAAAAGAAATGTTAATAAAACTAGTGGATAACACACAATAA
ATATCCAAATATCTGATGTTAACATTTCTGATAATGAAAAGTGACAATTG
ATTGAGAATATATGATATAAAGATAAATTTAAAGGTTCTCATTGATCTAG
TAATCTGGAGGGTAGGGGAGATAATGAAGAGTAATAGGTGCTAACATCTA
CAAACAAGTTGCTTACAGAACTTTCCTTTTAATAATGAGACTATTTCTAA
AATATCATGAATAATTCTCTAAAGTAAATTGGAAGATATCAATGGAAAGC
TGCTTGTCCTTTGGGGCTGGAGAGATGGCACAGTGTTTAAGAGCTTGTAC
TGTACTTCTGGAAGACTCAAGTTAGATACCCAGCATGCATGTCAGGTGGC
TTACAAATGCCTAGGACTCTAGTTCCAGGAGATCCTATGCCCTCTTCAGC
ACTCTACAGGCAGCTCCTCATTTGTACATACAGACCCATAAGTGGAAATA
TGTATATACACATAATTACAAAATAATAAAATATACAAAGAGCTCTTCAT
CTATATCCTGTTTACTGGTGTGTACATAGAATCATAATTATGTATTCATG
ATTTGATTAGCCTTTTGTATATGGACAGATAAATAAGGTATGCATGTGTG
TGAATGCATGTGTGTGAATGCATGTGTGTGAATGCATGTGTGTG

NCCCAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCAGTTCAGCATAGCTAGNG
TTGTTTGGGAGTTTTCTGTTTGTTGGTTGGTTGGTTGGTTGGTTGGTTGN
NNNNNNNNNNNNNNNNNNNNGGGGGGGNNNNNNNNNNNGGGNGGGGNGGG
GGNNGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGNGGGGGGTGG
NGGGGNGNNGNNGGGGNGGGGGGGGGGGGGTTGTGNGGGGGGGGGGGGGG
GGNGGNGGGGCCCCCTTTTTTNTGTGTTTGTTTTTTTGTTTTTTTTTGTG
TTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTCCTNNNTTNTTTTCTTTGTTTCCCCCCCCCTCTCCCTTCCCCCCCC
CCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCTCCTCCCCCCCCCTCCCCCCCTCTCTCTCCCCCCCCCC
CCGCCCTCTCTTCCCCCCCTCCCCCCCCCCCCCCCCCCTCCTCCCCCCCT
CTTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCC
CCCCCCCCCCCCCCCCCCCCCCCTTNTCCCCCCCCCCCCTTCCCCCCCTC
CCCTCCTCCCCCCCTCCCCTCCCTTCTCCCCCCCCTTCCCCGNTCGCTCC
CCCCCCCCCCCCCTNCCCTCCCCCCCCCTCTCTCCNTCCCCCGCTCCCTC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_e23.b1 MSMg01no355_e23.b1 CHROMAT_FILE:
MSMg01no355_e23.b1 PHD_FILE: MSMg01no355_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:43 2005
         (696 letters)



>mm_chr13_102436096_102437191
          Length = 1096

 Score =  843 bits (436), Expect = 0.0
 Identities = 481/500 (96%), Gaps = 7/500 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcataaaagaaatgttaataaaactagtggataacacacaataaatatccaaata 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggaattcataaaagaaatgttaataaaactagtggataacacacaataaatatccaaata 441

                                                                       
Query: 64  tctgatgttaacatttctgataatgaaaagtgacaattgattgagaatatatgatataaa 123
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 440 tctgatgttaacatttctgataatgaaaagtgacaattgattgagaatatgtaatataaa 381

                                                                       
Query: 124 gataaatttaaaggttctcattgatctagtaatctggagggtaggggagataatgaagag 183
           |||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 380 gataaatttagaggttctcgttggtctagtaatctggagggtaggggagataatgaagag 321

                                                                       
Query: 184 taataggtgctaacatctacaaacaagttgcttacagaactttccttttaataatgagac 243
           ||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taacaggtgttaacatctacgaacaagttgcttacagaactttccttttaataatgagac 261

                                                                       
Query: 244 tatttctaaaatatcatgaataattctctaaagtaaattggaagatatcaatg------- 296
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 260 tatttctaaaatatcatgaataattctctaaagtaaattggaagatatcaatggaaacta 201

                                                                       
Query: 297 gaaagctgcttgtcctttggggctggagagatggcacagtgtttaagagcttgtactgta 356
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaaagctgcttgtccttcggggctggagagatggcacagtgtttaagagcttgtactgta 141

                                                                       
Query: 357 cttctggaagactcaagttagatacccagcatgcatgtcaggtggcttacaaatgcctag 416
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 140 cttctggatgactcaagttagatacccagcatgcatgtcaggtggcttacaaatgccaag 81

                                                                       
Query: 417 gactctagttccaggagatcctatgccctcttcagcactctacaggcagctcctcatttg 476
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 80  gactctagttccaggagatcctatgccctcttctgcactctacaggcagctcctcatttg 21

                               
Query: 477 tacatacagacccataagtg 496
           ||||||||||||||||||||
Sbjct: 20  tacatacagacccataagtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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