BAC Information

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BAC

Clone NameMSMg01-355I07
Chromosome13 (Build37)
Map Location 28,612,319 - 28,612,789
singlet/doubletsinglet
Overlap genenone
Upstream genePrl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1
Downstream geneLOC626683, 2610307P16Rik, Sox4, LOC100041135, Cdkal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355I07.T7 (MSMg01no355_i07.b1)MSMg01-355I07.TJ (MSMg01no355_i07.g1)
ACCAG465887AG465888
length758766
length of high quality
(start - end)
444 (45 - 488)471 (73 - 543)
definitionCHROMAT_FILE: MSMg01no355_i07.b1 PHD_FILE: MSMg01no355_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:59 2005CHROMAT_FILE: MSMg01no355_i07.g1 PHD_FILE: MSMg01no355_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAGTTGTCAGCTTCATGGTCTTACTAAGACGTTGGAACTCTGGCG
AAGACTTAACTGTATCAGGATTTAATTTTTAAAGGCACTATAGTAAGATA
ACACTAAAGGAGAGTATGTGGACCCTCCTCAACAGCCTTGGGTGACAGGC
AGGGAACAGAGAGGAGGGGGTGATGACCAGCTCCTTAGCACAAGGCCATT
TGGCTTGTTAGGATGGGAGACTGTGAAGGGCTTGCCCTTTTCATGGTATG
GTCTCCAACCTCTCTCCCCCCTTAGGATTAAACTAAATAAGGCCACACTT
AACTGAGGTGATCAAATGATCTTCTCATCCTTGGATGAGTGGGCATGGCT
GGGGGAGCATTGACCCGATTCCTCCCGAGGGCGCTGTCACAATGCACAAT
CATGGCTCTTGGTATCTTTTGGGGAGGGGAGGCAGAGCCTTAGAAAGATA
CTTTTGGTTGTAACTGGAACTAGATACCAACCTCCATCCAAACAGGGTGT
GTCTCTCATGGAACTCAGAAATGTTCAGTTGGATCTTCTCCCGCAGTGCC
TAGCCTTATACCCACCTATGCGCCCACACTGTATTCGTATTACTCCGACC
CCTTTTTTCTCTGCTTTGATCAATTGCCACTTTCTCATGGTAAAATTTGT
TCACATTTTACAACAGCAAGGCCCTCCTATATAATTACTCTTTTTCATCA
TACCCTTN
ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTTCAGCATAACAACAACATGGATTAT
TTAAGCCATTTCTCGATTTCTGCCCAGGCCTGAAACCAGCCTCAGTGCCT
TTTATCAACCTTGTTGATCTCTGTGTGTTTTCTTCTGTGGATCGCACCGG
GCAGGATCTTAGTTTTTCAATACATTCCTGTGGGTACAAGTGTATTGGCT
GCAAGAAGTTTCCTTAATTTACCCAGTTTAATAAAAATGATTTGTGCTTT
TGCTCATAGTCTGGCTTCTTTCAGAGAACAGAAATGACCGGTGCCCTGTG
GTGTTCTCTGTACCAGACTGCTGAGCCGTTCTCTCCATGCCGCTTAGGGA
AGCAGCGTTGGGAACACATGCAGGGTGAGGCGCACCAGTCCCTGCTCTTC
TTTCAACTGCATTTGCACAATCTCACAAGCGAACTTGCCAAGTTCAGTTT
ATGTCCTGGTCACCTCAGAAGGAACATTTGGAGTAAGAGTGCATGTCCAA
AGTCTTCCTGAGAGATTTTCTTCTGCTCTAAAGACACCTACCAGCCCATT
ACCCATGCAGCCCATGGTGAACAGAGTTCTTTGTACTTTGTGGATGAAGC
GGAGTTGAAATCTTTTCTAAAACAGCTGCTGCTTGAAATTTGTTCCGGCC
ACTACAGGTTTTTTTTTCTTAAAGGGTAGGACATGTTTTTTGCCCGTTGA
GAAATGTATTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_i07.g1 MSMg01no355_i07.g1 CHROMAT_FILE:
MSMg01no355_i07.g1 PHD_FILE: MSMg01no355_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:59 2005
         (471 letters)



>mm_chr13_28612119_28612989
          Length = 871

 Score =  857 bits (443), Expect = 0.0
 Identities = 464/471 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttcagcataacaacaacatggattatttaagccatttctcgatttctgcccaggcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tgttcagcataacaacaacatggattatttaagccatttctcgatttctgcccaggcctg 612

                                                                       
Query: 61  aaaccagcctcagtgccttttatcaaccttgttgatctctgtgtgttttcttctgtggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aaaccagcctcagtgccttttatcaaccttgttgatctctgtgtgttttcttctgtggat 552

                                                                       
Query: 121 cgcaccgggcaggatcttagtttttcaatacattcctgtgggtacaagtgtattggctgc 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgcaccgggcaggatcttagtttttcaatacattcctgtgggtacaagtgtattggctgc 492

                                                                       
Query: 181 aagaagtttccttaatttacccagtttaataaaaatgatttgtgcttttgctcatagtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aagaagtttccttaatttacccagtttaataaaaatgatttgtgcttttgctcatagtct 432

                                                                       
Query: 241 ggcttctttcagagaacagaaatgaccggtgccctgtggtgttctctgtaccagactgct 300
           |||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 431 ggcacctttcagagaacagaaatgaccggtgccatgtggtgttctctgtaccagactgct 372

                                                                       
Query: 301 gagccgttctctccatgccgcttagggaagcagcgttgggaacacatgcagggtgaggcg 360
           ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
Sbjct: 371 gagccgttctctccatgccgcttagggaagcagtgttgggaacacatgcaggatgaggtg 312

                                                                       
Query: 361 caccagtccctgctcttctttcaactgcatttgcacaatctcacaagcgaacttgccaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 caccagtccctgctcttctttcaactgcatttgcacaatctcacaagcgaacttgccaag 252

                                                              
Query: 421 ttcagtttatgtcctggtcacctcagaaggaacatttggagtaagagtgca 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttcagtttatgtcctggtcacctcagaaggaacatttggagtaagagtgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)