BAC Information

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BAC

Clone NameMSMg01-355I24
Chromosome13 (Build37)
Map Location 94,809,359 - 94,809,796
singlet/doubletsinglet
Overlap genenone
Upstream geneEG218444, Papd4, LOC100039163, Homer1, Jmy, EG619883, Bhmt, Bhmt2, Dmgdh, Arsb
Downstream geneCycs-ps3, Lhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1, Tbca, Otp, Wdr41, Pde8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355I24.T7 (MSMg01no355_i24.b1)MSMg01-355I24.TJ (MSMg01no355_i24.g1)
ACCAG465921AG465922
length772768
length of high quality
(start - end)		457 (49 - 505)483 (84 - 566)
definitionCHROMAT_FILE: MSMg01no355_i24.b1 PHD_FILE: MSMg01no355_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:03 2005CHROMAT_FILE: MSMg01no355_i24.g1 PHD_FILE: MSMg01no355_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTGCTTAGCTCTGTTCCCCCCCCCTTTTTTTTTGATAGGGT
TACTTGGTTCTCTGGAGTATCTAGTCTGTTAGTCTATGTCTTTTTATTGG
GGAGTTGAGTCCATTGATGTTAACAGATATTAAGGAATAGTGATTGTTGC
TTCCTGCTATTTTTGTTGTTAGAGGTGGAATTATGTTTATGTGGCTATCC
TTCTTTTGGATTTGTTGAAAGATTACTTTCTTGCTTTTTCTAGGGTGTAG
TTTCCTTCTTTGTATTTGAGTTTTCCATCTATTATCCTTCGTAGGGCTGA
ATTTGTGGAGAGATTGTGTAAATTTGTTTTTGTCATAGACTATCTTGGTT
TCTCCATCTATGGTAATTGAAAATTTTGCTGGGTATAGTAGCTGGACTGG
CATTTGTGTTCTCTTAGGGTCTCTATGACTTCTGCCCAGGATCTTCTAGC
TTTCATAGTCTCTGGTGAGAAGTCTGGTGTAACTCTGATAGGTCTGCTTT
TATATGTTACTTGACCTTTTACCCTTACTGCTTTTTAAATTCCTTCCTTG
TTTTGGGCATCCCGAAGCTCTGACTATTATGGAACGGGGAGGAATTTTTT
TTTTCGGTTCACTTTATTTGTTATTCCTTGTACCTCTTTTTGTTTTTCTC
CTCGGCCCCTCTCCTTTTTTTCTCCTTTTTTTCACTGTTTTTTTTTACAC
CTTATTTTCCTCCCTCCCTCCN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGGTACCCCTCTTT
TTGCTCTCCTTGCTCTCCATGCCAAGGACAAACCTTCAGTACTGGAAGGA
ACCAACCAGAATCCCAGCCTACAGTGATGTGAGTCATGTGGTACTGGCGT
AGCTTACTGAATGCTTTATGGTCCTGTGAAGAATGTCAGGTAATCAGATG
AAGGGAAATGTTCTCTCAGAGGACATCAAAATCCAAGCTCTGACAGAAGC
TAGGAGACTTCAGAAATCACTCCAGGTTGGCCTGACTCAAGTTTCATGGC
CAAGCGTTATGGAGACACACACAGATGGGGTCTAAATCTACCCTCCTGGC
ACACACCACCTCGGACAGCTCTAGAACCAGTAACAGACAGACAGACAAAC
AGACAGACAGAAATAAAGAAACCTTCCTTCTCCTTTTAAATGATTCTTTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
NCTCTCTCTCTCTCTCATTTTTCGAAAAAGGGTTTCTCTGTTTCTCTGTA
TAAACCTGGGTGGCCCGGAACTTTACTCGTAAAACCCATGTGGCCCCAAA
TTATAAAATCCTCCTGCTTCTGCTCTCCACAGTGTGTTGATTAAAGGGCG
GGTCGGGAGATCATTCCTCCTTCCTCAATCATATTTTTCTTTTCTCCTCC
ACTCCTTTCGCTTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_i24.g1 MSMg01no355_i24.g1 CHROMAT_FILE:
MSMg01no355_i24.g1 PHD_FILE: MSMg01no355_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:03 2005
         (483 letters)



>mm_chr13_94809248_94810130
          Length = 883

 Score =  785 bits (406), Expect = 0.0
 Identities = 430/438 (98%), Gaps = 2/438 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcaggtacccctctttttgctctccttgctctccatgccaaggacaaaccttcagtact 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 549 atcaggtacccctctttttgctctccttgctctccatgccaaggacaagccttcagtact 490

                                                                       
Query: 61  ggaaggaaccaaccagaatcccagcctacagtgatgtgagtcatgtggtactggcgtagc 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 489 ggaaggaaccaaccagaatcccagcctgcagtgatgtgagtcatgtggtactggcgtagc 430

                                                                       
Query: 121 ttactgaatgctttatggtcctgtgaagaatgtcaggtaatcagatgaagggaaatgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttactgaatgctttatggtcctgtgaagaatgtcaggtaatcagatgaagggaaatgttc 370

                                                                       
Query: 181 tctcagaggacatcaaaatccaagctctgacagaagctaggagacttcagaaatcactcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 369 tctcagaggacatcaaaatccaagctctgacagaagctaggagacttcagaaatcacgcc 310

                                                                       
Query: 241 aggttggcctgactcaagtttcatggccaagcgttatggagacacacacagatggggtct 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 309 aggttggcctgactcaagtttcatggccaagcattatggagacacacacaggtggggtct 250

                                                                       
Query: 301 aaatctaccctcctggcacacaccacctcggacagctctagaaccagtaacagacagaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aaatctaccctcctggcacacaccacctcggacagctctagaaccagtaacagacagaca 190

                                                                       
Query: 361 gacaaacagacagacagaaataaagaaa-cct-tccttctccttttaaatgattctttct 418
           |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||
Sbjct: 189 gacaaacagacagacagaaataaagaaaccctatccttctccttttaaatgattctctct 130

                             
Query: 419 ctctctctctctctctct 436
           ||||||||||||||||||
Sbjct: 129 ctctctctctctctctct 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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