BAC Information

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BAC

Clone NameMSMg01-355M15
Chromosome13 (Build37)
Map Location 24,718,762 - 24,719,216
singlet/doubletsinglet
Overlap gene6330500D04Rik
Upstream geneHist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik
Downstream geneLOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355M15.T7 (MSMg01no355_m15.b1)MSMg01-355M15.TJ (MSMg01no355_m15.g1)
ACCAG466092AG466093
length775754
length of high quality
(start - end)		64 (45 - 108)455 (77 - 531)
definitionCHROMAT_FILE: MSMg01no355_m15.b1 PHD_FILE: MSMg01no355_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:20 2005CHROMAT_FILE: MSMg01no355_m15.g1 PHD_FILE: MSMg01no355_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTGGTTTCGATTTTACAGCTTGGNNGTTTGGTATAACAGCTTAAA
GGAAATCAGTGGNAAATTCTTTTCTCCTTTTCTTCTGNAAAAATATTGGA
CCTCTTCTTCTAAAATATTTCACCACATCATAACANNNNCTCCTGGGNNC
AAACTANNNAACCGGANNATAACCGGGCGGNATGGGGGCCGCCCTTACCC
CAGACTGTGGGAGGCTAACCNNNNNATTCTNAAATTTAGNNNCGNCCCGG
GCCTAGGAAGGGGGGGGGGGGGGGGGGGAGGAGGGGGGGCGGGGCAGGGG
GGGGGGGCGGGGGGAGAGGGGGCGGGGGGGGGGGGGGGGNNNNNAAACTA
ANNAAANNNNAAAAAAAAAAAACGGGGGGGGGGGGGGGGGAGGGGGGGGG
GGGGGGCGGGGGGGGGGGGGGGGGGGAGGGAAGGGAGTCTNNNNNNNNNN
NNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TTNNTNNNNNNNNNNNNNNNNNNNTTTNNNNNNNNNNNNNNNNNNNNNNN
NTNNNNNNNNNNNNTTTNNNNNNTTTTTNNNTNNTTTTTNNNNNTTNNNN
NNTNNNNNNNNTNNNNNTTTTTTNNTTTTTTNNTTTTTTNTNNNTTTTTT
TTTTTTTNTTTTTTTTAGTGAGGTG

NCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTATGAATTCCTAACTAATTG
GGACCAGGTCTGAGGATCACTGCATAAATGTTTTGTGATTAGCCCTCATG
GAGGCTCCTGAGAGAAATGCCACCCACGGCAGATGCGGTCTCCCGAAGAA
CTTATGGACTATTTTCCACCAATGAAAGACTGTCATTGGAAGCCTGCCAC
ATGCTGGGCTCAGTTCTATTCTGGCTCCCAGGATCCAGCAGTGACTACAA
AGTCCCTAAAGTCCCAGGTCTGGTGAAGTCACACAGCATTAGAGAGGGGG
GACACAGACAGGAAAAGATGCAGAAATGCCCAGAGTTGGGGGAGAGATGT
GTTGTTGACAAATGAGGTGCAGGATGGGAAGGATCAGACATGGCCGCCCA
GGAGGGATTGGCTGACAAATGCCTGAAGCCTAAAGGAAGTCAAAGTCCGG
CCCTGTGGATGTCTAAAGGGAGAGTGTTCCAGGAATATCAAAGAGGCCGC
TGTGTCTGCAGCACAGCAGGAATGGCAGAAAGTGGAAGATGAGATCCAAG
AACTTGGGGCGCCTCCCCCTTTCAGAGTCCCTAAAGTGTGTGCACACTCT
GCTTTTTATTTTTTTCGACCTCTGGCTCCTGGTCTCTGCTCCCTGTACGG
TTCTATTTACCTATTTTTCCCTTCTCTTTCTGTCCCCTTATCTCTATCTA
TCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_m15.g1 MSMg01no355_m15.g1 CHROMAT_FILE:
MSMg01no355_m15.g1 PHD_FILE: MSMg01no355_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:20 2005
         (455 letters)



>mm_chr13_24718562_24719416
          Length = 855

 Score =  864 bits (447), Expect = 0.0
 Identities = 453/455 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctatgaattcctaactaattgggaccaggtctgaggatcactgcataaatgttttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctatgaattcctaactaattgggaccaggtctgaggatcactgcataaatgttttgt 260

                                                                       
Query: 61  gattagccctcatggaggctcctgagagaaatgccacccacggcagatgcggtctcccga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattagccctcatggaggctcctgagagaaatgccacccacggcagatgcggtctcccga 320

                                                                       
Query: 121 agaacttatggactattttccaccaatgaaagactgtcattggaagcctgccacatgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 agaacttatggactattttccaccaatgaaagactgtcattggaagcctgccacatgcta 380

                                                                       
Query: 181 ggctcagttctattctggctcccaggatccagcagtgactacaaagtccctaaagtccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctcagttctattctggctcccaggatccagcagtgactacaaagtccctaaagtccca 440

                                                                       
Query: 241 ggtctggtgaagtcacacagcattagagaggggggacacagacaggaaaagatgcagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtctggtgaagtcacacagcattagagaggggggacacagacaggaaaagatgcagaaa 500

                                                                       
Query: 301 tgcccagagttgggggagagatgtgttgttgacaaatgaggtgcaggatgggaaggatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcccagagttgggggagagatgtgttgttgacaaatgaggtgcaggatgggaaggatca 560

                                                                       
Query: 361 gacatggccgcccaggagggattggctgacaaatgcctgaagcctaaaggaagtcaaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacatggccgcccaggagggattggctgacaaatgcctgaagcctaaaggaagtcaaagt 620

                                              
Query: 421 ccggccctgtggatgtctaaagggagagtgttcca 455
           | |||||||||||||||||||||||||||||||||
Sbjct: 621 ctggccctgtggatgtctaaagggagagtgttcca 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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