Query= MSMg01no355_o09.b1 MSMg01no355_o09.b1 CHROMAT_FILE:
MSMg01no355_o09.b1 PHD_FILE: MSMg01no355_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:28 2005
(424 letters)
>mm_chr13_86372321_86373144
Length = 824
Score = 667 bits (345), Expect = 0.0
Identities = 373/387 (96%), Gaps = 10/387 (2%)
Strand = Plus / Minus
Query: 1 ttgcacagagacatgaatagaaagctagctactaaaaaggagacctgaggctgaaagagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttgcacagagacatgaatagaaagctagctactaaaaaggagacctgaggctgaaagagt 323
Query: 61 ttactcagttcataaaacattacaaaaatttctacaaagtaccatgattttatatatcat 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 322 ttactcagttcataaaacattacaaaaatttctacaaagtaccatggttttatatatcat 263
Query: 121 tatggggacctgtaacacttgacattcaatgaataacttctatttaatctcaaattattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tatggggacctgtaacacttgacattcaatgaataacttctatttaatctcaaattattt 203
Query: 181 tattttcttttagatattttcttcatttacatttaaaatattctccctaaagtccattat 240
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 202 tattttcttttagatattttcttcatgtacatttcaaatattctccctaaagtccattat 143
Query: 241 a----cccccct-cttgttcctgctccacaacctacccacacatgcttccttgccctggc 295
| ||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 atcctcccccctgc-----cctgctccacaacctacccacacatgcttccttgccctggc 88
Query: 296 atttcctctgtagtgggcatatgaacttcagaatatcaagggcttctcctcccactgatg 355
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 87 atttcctctgtagtgggcatatgaacttcggaatatcaagggcttctcctcccactgatg 28
Query: 356 ccagactaggccatcctcagctacata 382
|||||||||||||||||||||||||||
Sbjct: 27 ccagactaggccatcctcagctacata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space: 338225
Effective search space used: 338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_o09.g1 MSMg01no355_o09.g1 CHROMAT_FILE:
MSMg01no355_o09.g1 PHD_FILE: MSMg01no355_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:28 2005
(566 letters)
>mm_chr13_86180533_86181498
Length = 966
Score = 1073 bits (555), Expect = 0.0
Identities = 564/567 (99%), Gaps = 2/567 (0%)
Strand = Plus / Plus
Query: 1 tgttaacaccttacttttattcttcgctggagcagagaaaaattgggaatggacatgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttaacaccttacttttattcttcgctggagcagagaaaaattgggaatggacatgaat 260
Query: 61 ttctgaaggaataacagaaaaattcagttaaattaactagtgagtaaagcaaaatagata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgaaggaataacagaaaaattcagttaaattaactagtgagtaaagcaaaatagata 320
Query: 121 tgcatttttgctaatattccaaagttacaggattagaaagacagggtactatggtatgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcatttttgctaatattccaaagttacaggattagaaagacagggtactatggtatgat 380
Query: 181 gctgtcacaaggtaaagggaacttctatttctaacttttacaaaggggtccaataagtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgtcacaaggtaaagggaacttctatttctaacttttacaaaggggtccaataagtga 440
Query: 241 atatggtctatcaaaatgaaagagtagcaaatcctaaaagctgcgtca-taaacagaacc 299
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 441 atatggtctatcaaaatgaaagagtagcaaatcctaaaagctgcgt-agtaaacagaacc 499
Query: 300 cactttgaaagcccaaggctatttacccgcccttgttcagaatcctatttacacagagaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cactttgaaagcccaaggctatttacccgcccttgttcagaatcctatttacacagagaa 559
Query: 360 tgtttaagaggtttttcctatctctgatttagtctgttctgcttccttagatgtaataag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtttaagaggtttttcctatctctgatttagtctgttctgcttccttagatgtaataag 619
Query: 420 agatacagttactttaagttggaaatggccttagggatctatttaccacattctgtgttg 479
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 620 agatacagttactttaagttggaaatggccttggggatctatttaccacattctgtgttg 679
Query: 480 cagaaatagagatgtagagaagcttatcttttacaatgtgttttttgctccctccatata 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cagaaatagagatgtagagaagcttatcttttacaatgtgttttttgctccctccatata 739
Query: 540 tttaataaagagctctgctcactactg 566
|||||||||||||||||||||||||||
Sbjct: 740 tttaataaagagctctgctcactactg 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
