BAC Information

Click to search

BAC

Clone NameMSMg01-355O20
Chromosome13 (Build37)
Map Location 7,553,696 - 7,554,034
singlet/doubletsinglet
Overlap genenone
Upstream genePitrm1, Pfkp, LOC100039532, LOC667611, EG623516
Downstream geneLOC791083, LOC382722, Adarb2, EG666941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355O20.T7 (MSMg01no355_o20.b1)MSMg01-355O20.TJ (MSMg01no355_o20.g1)
ACCAG466194AG466195
length732750
length of high quality
(start - end)
511 (53 - 563)408 (83 - 490)
definitionCHROMAT_FILE: MSMg01no355_o20.b1 PHD_FILE: MSMg01no355_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:30 2005CHROMAT_FILE: MSMg01no355_o20.g1 PHD_FILE: MSMg01no355_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCAACTGAGGATATTCATATGAATAAGAAACACTTAAG
GAAATATTTGTTATCCTTAGCTGTCAGGGAAATGCAAAGTAAAACTACTT
TGAAATTTCATCTTACAACTTTCAGTATGGCTAGTATCAGTAAAACAACT
GACGAATCATGCTGGCAAGGCTGTGGGTCAAGAGGAACACTCCTCCACTG
CTGGTGGCAATGCAACCTTGTACAGCCACTATGACAATCAGTATGACAGT
TTCTCAGAAAGTCAGGAATAGATCTATGTCAAGACCAAGCTATCTCTTGA
ACATATATACAAAGAATTCTCTATCCTACCTCAAGGACACTAGCTCAACC
ATGTTTATTTTGATCTTATTCAAATAAACAGAAACTGGAAATAATCTAGA
TGATTTTCAACAGAAGAGTGGATAAAGAAATTTGGTACATTTAAACAATG
GAGAATTACTTAACTCTTTAAAAAATGCCAGGACCAGTAAGTAGGAGTGG
GTGGGTAGGTGAGCAGGTAAAGTTTCTATTTTTTCCTTTTTTTTTTTACC
CCCTCTTTTCCCCTTGTATTTTATATCCCTTTCTACTTTCTTCCTTTCCC
CTTTAACTTTACCCCCCCTCCTTTTCTCCCTCCCCCCCATCATCCCCTTT
ATCCCTTTTTCTTACCCTTTTATCACCTCCCC
NNCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGTGTGCAAATGAGT
TGGTCTTGTTCTAGTGCCTTCTCGGGCTCCCCTCCTTCTGTTTGTCTTGT
CCAATTCTGAGGTAATAGTTGTATCCTATATTTTATCTTGTTATATTTTA
CTATTATCTGTTAGAAGCCTGTAATTCTTTTAATGAGTGTCAGAAAGGTG
TGGTTTGGATGGGAGGGCCAGTGGAAAGGAACTGAAAGGATAGATGGAGG
GAAACCTATTATCAAGAAATGTTATATACCAGGGAAGAATCCATTTTCAA
TTTTTAAAAGAGGGACACCTACCAGTAAAACTGAGTCAGACCCCACTCTT
GGGATGGCAATGATGCTTAATTAATTCTATAAAGTTTATCTAAATATTGT
CAAAATGGATGTGTTGGAGTTGTAACATATTTTTTGAGGAGGACACAAAA
ATTCAGTCTATTATAATCTGAGTAAGACTCATACAATATTTACCAGGTGA
CATGCTATAAAGTACCACTGAAATTATTATTCTCCATAAACTACTCACAT
TTTTTCCTGTGTAAAGATTTTGAATAGGGCCTCTTTTCCCAATATACGTG
TAATATACTTCACCCGCTTATTGAAATGGTATCTCTCCCCCCCTTTTGCC
TTAATTGTCGGTCTAATTTACACTCCCCTTTAAGTAATCCTCTCTTTTTN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_o20.g1 MSMg01no355_o20.g1 CHROMAT_FILE:
MSMg01no355_o20.g1 PHD_FILE: MSMg01no355_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:30 2005
         (408 letters)



>mm_chr13_7553227_7554034
          Length = 808

 Score =  617 bits (319), Expect = 0.0
 Identities = 334/339 (98%), Gaps = 1/339 (0%)
 Strand = Plus / Minus

                                                                       
Query: 71  aattctgaggtaatagttgtatcctatattttatcttgttatattttactattatctgtt 130
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 aattctgaggtgatagttgtatcctatattttatcttgttatattttactattatctgtt 749

                                                                       
Query: 131 agaagcctgtaattcttttaatgagtgtcagaaaggtgtggtttggatgggagggccagt 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 748 agaagcctgtaattcttttaatgagtgtcagaaaggtgtggtttggatgggaggggcagt 689

                                                                       
Query: 191 ggaaaggaactgaaaggatagatggagggaaacctattatcaagaaatgttatataccag 250
           ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 688 ggaaaggaactgaaatgatagatggagggaaacctattatcaggaaatgttatataccag 629

                                                                       
Query: 251 ggaagaatccattttcaattttt-aaaagagggacacctaccagtaaaactgagtcagac 309
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 628 ggaagaatccattttcaattttttaaaagagggacacctaccagtaaaactgagtcagac 569

                                                                       
Query: 310 cccactcttgggatggcaatgatgcttaattaattctataaagtttatctaaatattgtc 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cccactcttgggatggcaatgatgcttaattaattctataaagtttatctaaatattgtc 509

                                                  
Query: 370 aaaatggatgtgttggagttgtaacatattttttgagga 408
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aaaatggatgtgttggagttgtaacatattttttgagga 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)