BAC Information

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BAC

Clone NameMSMg01-356L04
Chromosome13 (Build37)
Map Location 57,950,672 - 58,109,391
singlet/doubletdoublet
Overlap geneSpock1, Klhl3
Upstream geneTrpc7, LOC100040995
Downstream geneHnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510, LOC435361, Ntrk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356L04.T7 (MSMg01no356_l04.b1)MSMg01-356L04.TJ (MSMg01no356_l04.g1)
ACCAG466777AG466778
length758839
length of high quality
(start - end)		607 (40 - 646)143 (57 - 199)
definitionCHROMAT_FILE: MSMg01no356_l04.b1 PHD_FILE: MSMg01no356_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:30 2005CHROMAT_FILE: MSMg01no356_l04.g1 PHD_FILE: MSMg01no356_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,108,789 - 58,109,391)(57,950,672 - 57,950,811)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGAGACTGTCAGTAATCACCAAAGGCCATTACATTGCTAATAAGCATGCT
CCAAAGACAAGACTTCAAACTGGTCTGCAGTCTATCTAGGCCACGCCCCT
TTATGACGTCCCAGTCCAGGGCTGAGTAAAAAGGCTGGACAGTGATGGAT
AGACTGGCAGAGAGAATGTGGTGCCAAGTTGAGTGTAGCTCCGGGCCAAG
AGTTACAAGAGATGTAGTTGAGGTAAGAGATCCCCTGAAGCAGAGAAATA
CAGGCCTAGCTTCTTAACATGTAGATGCATGTGGACTAAATATTTATTTA
CTGAGCACACACAATGTGTACTCTGTTATCCCAAATATTTAAAAATCACG
ATCTGGTGTTACAAACATCTTGGCTCAAGCGCTTCTCCTCTTACCCGTTT
CCCAAGAGAAAGGTCAGCCATTCCATCTTGCTTAGGTTTCAGGACGTTCC
CGCCCCCACACCCACAATGCATTTCTTTTACTTTTTCCCCTCCTCGAAGC
ATTTCCCGCACACTCTTACGTTTCCTTCTCTAAGATGTTGGAAATGTTGT
GACCCTGACTCTGTTCTCAGGAGAATCACCACCTTTCTCCCGGAAGCCAC
AGAGGAAGCACAGGGCATTTTGTAGGATGAGAAAGTGGGTGGGATCCTCA
GGGTCTACCTCCCCGCTAATGAGAAAGAGGGGGGGCTCCTTATGCCCCCC
CTCGTGTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTGTTTCCTTATTTGTAAAATCAAGAGAATGAAGCCTAATTCATA
GATCTGGGAAAGAGGTGCTCTATGAAACAGGGAAAGGGAGAACAGGAAGA
GAAGATGGAGAAGGAATAAGGAATGAGATTGATGGGGGTGGGGGAGCCNN
CCNCCCCCCCCTCCCCCCCGCCCCNNCCGNCCGCCCCCCCCCCCCCCCCC
CCCCNGGCCGCCCGCCCCGCCCGCCTGGGTCCCCCCGGCCCCCCCCGCCC
GCTTTTTCTCGTGCTTCTCTCCCGCTGTCCTCTCCTTCCCCTTTCTCCCC
TCTTCCCCCTCTTCCCTCCTTCCTCCCTTTCCCCCTTTCCCCCCTTCCCT
TCTCTCCCCTCTTCCCCCCCTTGTTTCCCTCCTGTCCCTCCCGCTCCTCC
CTCCTCTTCGCTTCTTCTCCCCCTTCCCCTTCCCTTCCTTCCCCCCCTTC
TTCTCTCTTCTTCCTCCCCCCCTCGTTCTTCTGCCGCTCTCTCCGCCCTC
CTCTTTCGCTGTGCCTTCGCTCCTTCCTTTTTGTTTTTCCTCCTTCTTCT
CTCGTCTCCTTCCCCCCCCTCCTCTCTTCCCTTTCCCCTCTCTCCTCTCC
CTCCCCTCTTCTCTCTCTTCTTCCCCCCTCTCCCTGTCNCCCTTCCCTGT
TTCGCCCCCTCTCTCCGCTCCTCCCCCTTGTGTGTCGCCCTCTTCCTTCC
GCCCTGTTCCTGGCTCCCCCTTTCCCCCTTGCTTCCTCCTGCCTCTCCTT
GCCTTTTGTTTTTCCCCTCTTTTTCTCCCCTCTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_l04.b1 MSMg01no356_l04.b1 CHROMAT_FILE:
MSMg01no356_l04.b1 PHD_FILE: MSMg01no356_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:30 2005
         (607 letters)



>mm_chr13_58108585_58109591
          Length = 1007

 Score = 1151 bits (595), Expect = 0.0
 Identities = 601/603 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagagactgtcagtaatcaccaaaggccattacattgctaataagcatgctcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gaattccagagactgtcagtaatcaccaaaggccattacattgctaataagcatgctcca 748

                                                                       
Query: 65  aagacaagacttcaaactggtctgcagtctatctaggccacgcccctttatgacgtccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 aagacaagacttcaaactggtctgcagtctatctaggccacgcccctttatgacgtccca 688

                                                                       
Query: 125 gtccagggctgagtaaaaaggctggacagtgatggatagactggcagagagaatgtggtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gtccagggctgagtaaaaaggctggacagtgatggatagactggcagagagaatgtggtg 628

                                                                       
Query: 185 ccaagttgagtgtagctccgggccaagagttacaagagatgtagttgaggtaagagatcc 244
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 627 ccaagttgagtgtagctccgggccaagagttacaagagatgttgttgaggtaagagatcc 568

                                                                       
Query: 245 cctgaagcagagaaatacaggcctagcttcttaacatgtagatgcatgtggactaaatat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cctgaagcagagaaatacaggcctagcttcttaacatgtagatgcatgtggactaaatat 508

                                                                       
Query: 305 ttatttactgagcacacacaatgtgtactctgttatcccaaatatttaaaaatcacgatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttatttactgagcacacacaatgtgtactctgttatcccaaatatttaaaaatcacgatc 448

                                                                       
Query: 365 tggtgttacaaacatcttggctcaagcgcttctcctcttacccgtttcccaagagaaagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tggtgttacaaacatcttggctcaagcgcttctcctcttacccgtttcccaagagaaagg 388

                                                                       
Query: 425 tcagccattccatcttgcttaggtttcaggacgttcccgcccccacacccacaatgcatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tcagccattccatcttgcttaggtttcaggacgttcccgcccccacacccacaatgcatt 328

                                                                       
Query: 485 tcttttactttttcccctcctcgaagcatttcccgcacactcttacgtttccttctctaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcttttactttttcccctcctcgaagcatttcccgcacactcttacgtttccttctctaa 268

                                                                       
Query: 545 gatgttggaaatgttgtgaccctgactctgttctcaggagaatcaccacctttctcccgg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 267 gatgttggaaatgttgtgaccctgactctgttctcaggagaatcaccacctttttcccgg 208

              
Query: 605 aag 607
           |||
Sbjct: 207 aag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no356_l04.g1 MSMg01no356_l04.g1 CHROMAT_FILE:
MSMg01no356_l04.g1 PHD_FILE: MSMg01no356_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:30 2005
         (143 letters)



>mm_chr13_57950472_57951014
          Length = 543

 Score =  271 bits (140), Expect = 1e-77
 Identities = 140/140 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttccttatttgtaaaatcaagagaatgaagcctaattcatagatctgggaaagaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtttccttatttgtaaaatcaagagaatgaagcctaattcatagatctgggaaagaggt 260

                                                                       
Query: 61  gctctatgaaacagggaaagggagaacaggaagagaagatggagaaggaataaggaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctctatgaaacagggaaagggagaacaggaagagaagatggagaaggaataaggaatga 320

                               
Query: 121 gattgatgggggtgggggag 140
           ||||||||||||||||||||
Sbjct: 321 gattgatgggggtgggggag 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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