BAC Information

Click to search

BAC

Clone NameMSMg01-357H15
Chromosome13 (Build37)
Map Location 81,359,859 - 81,360,370
singlet/doubletsinglet
Overlap geneGpr98
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984
Downstream geneLysmd3, Polr3g, 2900024O10Rik, Cetn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357H15.T7 (MSMg01no357_h15.b1)MSMg01-357H15.TJ (MSMg01no357_h15.g1)
ACCAG467368AG467369
length755763
length of high quality
(start - end)		512 (64 - 575)387 (75 - 461)
definitionCHROMAT_FILE: MSMg01no357_h15.b1 PHD_FILE: MSMg01no357_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:29 2005CHROMAT_FILE: MSMg01no357_h15.g1 PHD_FILE: MSMg01no357_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCC
AACATGCACAGATTTCCCATAGTCATGGATCGGCAGGGTTAATATTGTTA
AAACGGCTATCCTTCCTTAATCAAAGAGATGGTGTCTGCAGCAGTGGGAG
CAGGGACTCAAGTAAGACCCAGTGCTTACAATCAGATCCCCGAAATGCCT
TGAACAAGTATTCACCTCTGTGCCCTGGCTTCCTCCAGCAGTGAATCAGA
GAGGTTAGTGCTCATATTTCCCTGTCTAGATTATTGTGGATTAAGCAAGG
TGTTCCAAATGACCTGTGAGTGTTTAGCATGCTTGCATATTTTTGGAGAG
CTGCCTATCTCAGAGCCTTTGTATTTACAATCTCTTACCTCTAGAACGTT
CTTTCAGTCATTCTTTTTTATTTTCTTTTATTGAAAGCTTTTATTTCACA
ATATATTTTGATCATGTTTTTCTACTCTACCAACTCCTCCCAGACCCTCC
CTGTGTCCCAACTTGCCCACCTCAAAGTCCTTTCTTTCTCTCTTTTAAAA
TACAAAAAAACAAAACAAAGAAACCCTTAAACAAAATGAAATTTACATAT
GAGACCTTCCCACCAAAATACCAAAATGGAAGCCCAATATACAAGCATAA
AACCCATATAGGCTACAAAGAATGTCTGTCTAAAGCCACATGAGACACAG
TCTATATAAATACTCTTGACGTTGCTCTGTGCCGCCCCTCACCTAAAGGA
CTTAT

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTGAAGTGATTAATAGAGGTGGGTT
TCATGCCAGCAAGATTTTGCTGAAGGGACCCTGTTATAGCTGTCTCATAT
GAGGCTATGTCAGTGCCTGGCAAATACAGAAGTGGATGGTCACAGCCATC
TATAAGATGGAACACAGAGCCCCCAATGGAGAAGCTAGAGAAAGCACCCT
AGGAGCTGAAGGGATCTGCAACACTATAGGTGGAACAACAATATGAACTA
ACCAGTACCCCCAGAGCTCGTATCTCTAGCTGCATATGTAGCAGAAAATG
GCCTAGTTGGCCATCACTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTT
ATATGCCCCTGTACAGGGGAATGCTAGGACCAAGAAGTGGGAGTGGGTGG
GTAGGGGAGTANNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTNNTNNNNNTNNNNTTTTNNNTNNNNNTTTTTT
TTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTNTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTT
TTTTTTTTNTTTTTNTTTTNNTTTTTTNTTTTTTTTTTTTTTTTTTCCTT
CTCTTTTTTTTTTTCTCTTTTTTTTTTTTTTCTCTTCCTTTTTCCTTCTT
TGTTTTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_h15.b1 MSMg01no357_h15.b1 CHROMAT_FILE:
MSMg01no357_h15.b1 PHD_FILE: MSMg01no357_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:29 2005
         (512 letters)



>mm_chr13_81359748_81360659
          Length = 912

 Score =  967 bits (500), Expect = 0.0
 Identities = 509/512 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcccatagtcatggatcggcagggttaatattgttaaaacggctatccttccttaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttcccatagtcatggatcggcagggttaatattgttaaaacggctatccttccttaatca 564

                                                                       
Query: 61  aagagatggtgtctgcagcagtgggagcagggactcaagtaagacccagtgcttacaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aagagatggtgtctgcagcagtgggagcagggactcaagtaagacccagtgcttacaatc 504

                                                                       
Query: 121 agatccccgaaatgccttgaacaagtattcacctctgtgccctggcttcctccagcagtg 180
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 503 agatctccgaaatgccttgaacaagtattcacctctgtgccctggcttcctccaccagtg 444

                                                                       
Query: 181 aatcagagaggttagtgctcatatttccctgtctagattattgtggattaagcaaggtgt 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aatcagagaggttagcgctcatatttccctgtctagattattgtggattaagcaaggtgt 384

                                                                       
Query: 241 tccaaatgacctgtgagtgtttagcatgcttgcatatttttggagagctgcctatctcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tccaaatgacctgtgagtgtttagcatgcttgcatatttttggagagctgcctatctcag 324

                                                                       
Query: 301 agcctttgtatttacaatctcttacctctagaacgttctttcagtcattcttttttattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agcctttgtatttacaatctcttacctctagaacgttctttcagtcattcttttttattt 264

                                                                       
Query: 361 tcttttattgaaagcttttatttcacaatatattttgatcatgtttttctactctaccaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcttttattgaaagcttttatttcacaatatattttgatcatgtttttctactctaccaa 204

                                                                       
Query: 421 ctcctcccagaccctccctgtgtcccaacttgcccacctcaaagtcctttctttctctct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ctcctcccagaccctccctgtgtcccaacttgcccacctcaaagtcctttctttctctct 144

                                           
Query: 481 tttaaaatacaaaaaaacaaaacaaagaaacc 512
           ||||||||||||||||||||||||||||||||
Sbjct: 143 tttaaaatacaaaaaaacaaaacaaagaaacc 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |