BAC Information

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BAC

Clone NameMSMg01-358A17
Chromosome13 (Build37)
Map Location 34,940,507 - 34,940,863
singlet/doubletsinglet
Overlap genenone
Upstream geneSerpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746
Downstream geneLOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci, Cdyl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358A17.T7 (MSMg01no358_a17.b1)MSMg01-358A17.TJ (MSMg01no358_a17.g1)
ACCAG467795AG467796
length703706
length of high quality
(start - end)		529 (42 - 570)348 (69 - 416)
definitionCHROMAT_FILE: MSMg01no358_a17.b1 PHD_FILE: MSMg01no358_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:13 2005CHROMAT_FILE: MSMg01no358_a17.g1 PHD_FILE: MSMg01no358_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAACACTGCAGTACACAACTGACCTAATGAGAGTGACAGCTGTCAAGTGA
TGGGTGGGTGGATCATAGAGAGAGAATTTGCCCGACAGAGGGTGTAAGAC
TCCGGGGAGCCTTAGCTTACCCAGGACCCCTTGAATGAGCCACGTGGAGA
CAGAATCGGTGCAAAAAGCAAGAGGAATTTATTATTCCAGGGCACTGGGG
TCGTCTCAGGCCCGAAGGAGAGGCAGTGACCCCCACACAGCTCAGTCAGT
GAGCTTTTTATAGAGCTTTCAGGGCAGCAGCCACTAGGCACAATGTGATT
GGCAGAACAATGTGACTTTTTAAACTGATTGGTCTTTGAGGTGGCAAGGA
CTTCCCTTGTCTGAACGTGGGCAAAGTCTGTCCTGCGGAATGTGTCCCCA
TCCACAGGTCAGTTCCTGCCCTGTGGTCTGAGGAATGTTAATCAGCCTCT
CCCTTTCAGAGGGGCAAGTGTTCCATGACCTTCCCAAGGTTCCTGAGCTG
ACTTTCTCAAGGGTTCAGATTAAAACTTGTGAGTTATTTCCAGAGGCTAC
TATTTAATGTTTTCAGACTCTAGTTAACTGTAGGCNACTGATGGGAACTT
ATAAAAAAGAACAGTAAATAAGAGAGAGATAATATGTTTCCAATGGAATT
TTT

AGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTAGGACAGGATGATTTATCACACTGACACA
CACTGTTGTCACAATGACAGTTGATTTTCATGTCTCCAATTGAGTTCTTG
TTATGCTGCTCTCCTTTCCAAGAATGATGTGGGCAGACAGTTCTTCCAGA
TAATCCAGGTTTGATGTTCAACAACCATAAGATGGCTCACAACTATCTGT
TACAGTTCTAGGAGATCCAACATTTTCTTCTGGTATTCTTAGAACATCAA
ACATACAAGTGGTACACAGACATACATGCAGACAAAACACCCATAGACCT
TTAAGGAAAAGAGAAAGAAGAAGAAAAGAAGAAGGAGGAGGAGGAAGAGG
AGGAGGAGGAGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNN
NNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNN
NCNNNNNNNNNNNNNNNNNNNNNNNNNNTNNTNNNTNNTNNNNNNTTTTT
TTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_a17.g1 MSMg01no358_a17.g1 CHROMAT_FILE:
MSMg01no358_a17.g1 PHD_FILE: MSMg01no358_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:13 2005
         (348 letters)



>mm_chr13_34940307_34941058
          Length = 752

 Score =  644 bits (333), Expect = 0.0
 Identities = 347/357 (97%), Gaps = 10/357 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaggacaggatgatttatcacact----gacacacactgttgtcacaatgacagttga 56
           ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 201 tttaggacaggatgatttatcacactaagtgacacacactgttgtcacaatgacagttga 260

                                                                       
Query: 57  ttttcatgtctccaattgagttcttgttatgctgctctcctttccaagaatgatgtgggc 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttcatgtctccaattgagttcttgttatgctgctctcctttccaagaatgatgtgggc 320

                                                                       
Query: 117 agacagttcttccagataatccaggtttgatgttcaacaaccataagatggctcacaact 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacagttcttccagataatccaggtttgatgttcaacaaccataagatggctcacaact 380

                                                                       
Query: 177 atctgttacagttctaggagatccaacattttcttctggtattcttagaacatcaaacat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctgttacagttctaggagatccaacattttcttctggtattcttagaacatcaaacat 440

                                                                       
Query: 237 acaagtggtacacagacatacatgcagacaaaacacccatagacctttaaggaaaagaga 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaagtggtacacagacatacatgcagacaaaacacccatagacctttaaggaaaagaga 500

                                                                    
Query: 297 aagaagaagaa------aagaagaaggaggaggaggaagaggaggaggaggaggagg 347
           |||||||||||      ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaagaagaagaagaaaagaagaaggaggaggaggaagaggaggaggaggaggagg 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 752
Length adjustment: 9
Effective length of query: 339
Effective length of database: 743
Effective search space:   251877
Effective search space used:   251877
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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