BAC Information

Click to search

BAC

Clone NameMSMg01-358H18
Chromosome13 (Build37)
Map Location 109,925,735 - 110,146,971
singlet/doubletdoublet
Overlap genePde4d, LOC100040968
Upstream geneNdufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, EG668144, LOC621663
Downstream geneLOC100040577, Rab3c, EG432803, 9830130M13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358H18.T7 (MSMg01no358_h18.b1)MSMg01-358H18.TJ (MSMg01no358_h18.g1)
ACCAG468129AG468130
length744754
length of high quality
(start - end)		413 (35 - 447)428 (65 - 492)
definitionCHROMAT_FILE: MSMg01no358_h18.b1 PHD_FILE: MSMg01no358_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:45 2005CHROMAT_FILE: MSMg01no358_h18.g1 PHD_FILE: MSMg01no358_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,146,562 - 110,146,971)(109,925,735 - 109,926,162)
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACCTC
AGGTTTTGAGAATACCACCCCACTCCCACCCACAATGATGCTCATTTAGA
TTATAGGGCCCCTTTAGTTTTCATCTGTGTATTTCATTTAATGAAGTACA
GGTAAATGGCAAGGATACACACAGTCACATGAATGACATAAAAGTTGCTT
GAAAGATTGCTCAGAGGAAGTCACCACGAAGACCGAGCTTTAAGCAGGGG
TCCCCAAAATCACACGGACGACAGCTATATAGAAAGATGGTCTTTATTAT
TTCTTCAAACTCCAATCCACCACTCAGCTATAAGAATGCCTAGAGTATCC
CCTACTGGCCAGTGTACTCCATGGCTAGTGACTGGACATGGGAGAAAGAA
TGAGTTCACTGCTGCAATTGCAGTACCAGGGGCCAAAGCAAACTTCAGCA
GCCCTATTTCGGCCTTTGCATTTTGTTTCACGATGTTGTTCCTGCAGGGG
TTCTCCTCAGGGTTAGCATGCTTTACTTAAACTTGCCAAGTTTTCTCGAG
CACATTGTAAATTTAACTTCCAGCAAACTAAATGGCTTTAAAATCCCCAA
AAAAATAATTTTTGGTCTTGTTAAAAACTTTGGCTCCAAAGGCAAGTATC
CAATAAAATCCGGAGCCTACTTAAGGTGGGACCCTTAACAAAAGGAATTG
GCCTTGATTTAAATTCCAAAACGGGGTTTTTAAAAAAAAAACAA

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAATAAAGGGACGTAGATTATAATAATAGCAGTGAGG
AAAATAGCTCTATCCTGGTATAAACATTTTGTTTGCACATGAACAAGGTG
TGATGTTACTTGCTATTTCTCCATCTAAAATCACTTTGGAGTCTCCAAAT
AATCTTATATTTTTTAATGATTAAGAAGTCAAAACCAGTAGAGAGAGAAA
TAAAACTATTTCCTTTCACAAATATCATCACACCAGGATGACTCTGTCTT
TCTAGTCTTACAGAGTGTCTCTACCGCAAGGACACTTTTTGTTTTGGCAA
TTGATATTCCCTTCTGGTGCATATTAGAATTTTCCAATGTTTATACTCCA
GTTTTTTATTCATAACATGCAAAGCCAATTCATGTGATGAAATTTTCCAT
CCCATGGTGGGAATAGATCTGATGTGATGTTACCTTAAGATGCTTCAAGA
CAGTGATAAGACTGAAACAAGTATTTCATGGGAATCACTAAAAGTCTTTA
TTTCTAATTGTTGTTGCTACTAAAAAATTGTATCAGAACATTTTTGATTT
CTATTTCCACCAAGGTTTTTACTTGTTTAAGAAAAACTGGGTTAACCTTG
GACAAACAGGGCTAAAAAAATATTTTTCCAAAAACCCATATTTCAATAGG
CGAAAAAAAAATGGTGAATTCTTTTTTTATATAAACATCATTTCTTGGCC
CTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_h18.b1 MSMg01no358_h18.b1 CHROMAT_FILE:
MSMg01no358_h18.b1 PHD_FILE: MSMg01no358_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:45 2005
         (413 letters)



>mm_chr13_110146359_110147171
          Length = 813

 Score =  731 bits (378), Expect = 0.0
 Identities = 402/410 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaacctcaggttttgagaataccaccccactcccacccacaatgatgctcattt 63
           |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 613 ggaattcaacctcagggtttgagaacaccaccccactcccacccacaatgatgctcattt 554

                                                                       
Query: 64  agattatagggcccctttagttttcatctgtgtatttcatttaatgaagtacaggtaaat 123
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 553 agattatagggcccctttagttttcttctgtgtatttcatttaatgaagtacaggtaact 494

                                                                       
Query: 124 ggcaaggatacacacagtcacatgaatgacataaaagttgcttgaaagattgctcagagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ggcaaggatacacacagtcacatgaatgacataaaagttgcttgaaagattgctcagagg 434

                                                                       
Query: 184 aagtcaccacgaagaccgagctttaagcaggggtccccaaaatcacacggacgacagcta 243
           |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 433 aagtcaccacaaagaccgagctttaagcaggggtccccaaaatcacacagacgacagcta 374

                                                                       
Query: 244 tatagaaagatggtctttattatttcttcaaactccaatccaccactcagctataagaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tatagaaagatggtctttattatttcttcaaactccaatccaccactcagctataagaat 314

                                                                       
Query: 304 gcctagagtatcccctactggccagtgtactccatggctagtgactggacatgggagaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 313 gcctagagtatcccctactggccagtgtactccatggctagtgacaggacatgggagaaa 254

                                                             
Query: 364 gaatgagttcactgctgcaattgcagtaccaggggccaaagcaaacttca 413
           |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 253 gaatgagttcactgctgcaattacagtaccaggggccaaagcaaacttca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no358_h18.g1 MSMg01no358_h18.g1 CHROMAT_FILE:
MSMg01no358_h18.g1 PHD_FILE: MSMg01no358_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:46 2005
         (428 letters)



>mm_chr13_109925535_109926362
          Length = 828

 Score =  820 bits (424), Expect = 0.0
 Identities = 427/428 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaagggacgtagattataataatagcagtgaggaaaatagctctatcctggtataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaagggacgtagattataataatagcagtgaggaaaatagctctatcctggtataaa 260

                                                                       
Query: 61  cattttgtttgcacatgaacaaggtgtgatgttacttgctatttctccatctaaaatcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattttgtttgcacatgaacaaggtgtgatgttacttgctatttctccatctaaaatcac 320

                                                                       
Query: 121 tttggagtctccaaataatcttatattttttaatgattaagaagtcaaaaccagtagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 tttggagtctccaaataatcttatattttttaatgattaagaagtcaaaaccagtagagc 380

                                                                       
Query: 181 gagaaataaaactatttcctttcacaaatatcatcacaccaggatgactctgtctttcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaaataaaactatttcctttcacaaatatcatcacaccaggatgactctgtctttcta 440

                                                                       
Query: 241 gtcttacagagtgtctctaccgcaaggacactttttgttttggcaattgatattcccttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcttacagagtgtctctaccgcaaggacactttttgttttggcaattgatattcccttc 500

                                                                       
Query: 301 tggtgcatattagaattttccaatgtttatactccagttttttattcataacatgcaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtgcatattagaattttccaatgtttatactccagttttttattcataacatgcaaag 560

                                                                       
Query: 361 ccaattcatgtgatgaaattttccatcccatggtgggaatagatctgatgtgatgttacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaattcatgtgatgaaattttccatcccatggtgggaatagatctgatgtgatgttacc 620

                   
Query: 421 ttaagatg 428
           ||||||||
Sbjct: 621 ttaagatg 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |