BAC Information

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BAC

Clone NameMSMg01-358I04
Chromosome13 (Build37)
Map Location 8,612,857 - 8,613,086
singlet/doubletsinglet
Overlap geneAdarb2
Upstream geneLOC791083, LOC382722, EG666941
Downstream geneWdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358I04.T7 (MSMg01no358_i04.b1)MSMg01-358I04.TJ (MSMg01no358_i04.g1)
ACCAG468149AG468150
length738799
length of high quality
(start - end)		587 (31 - 617)236 (63 - 298)
definitionCHROMAT_FILE: MSMg01no358_i04.b1 PHD_FILE: MSMg01no358_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:47 2005CHROMAT_FILE: MSMg01no358_i04.g1 PHD_FILE: MSMg01no358_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGCTATACGACTCACTATAGTTTCCAGATCCGCGGAATTCTCTGTTTAG
TTCTCGTACCTCACTTTTTAATTCATTTATTTGGGTTTTTGAAGTCTAAC
TTACTGAGTTCTTCATATATTTTGAATATTAGCCTTCTGTTGGATATAAG
GTTAGTGAAGATCTTTTCCCAATCTGTAGGTTGTTGTTTTGTAATCTTAA
CTAAAATCAGGATAAGACAAGGTTGCCCACTTTCCCTATCTAATCAAATA
CATCTTCCTATATTTGAAGTTCTAGCTAGAGCAATAAGACAACAGAAGGA
TATCAAAGGGATACAAATTAGAAAGAAGAAGTCAAGCTATCACTATTTGT
AGATGATATGATAATATACTTAAGCAACCCCCAAAATTCTGCCAGAGAAT
TCCTATATAAACAACTTTAGCAAAGTGGCTGGATATAAAATTAAATCAAA
CAAATCAGTAGCCTTCCTTATACAAATAATAAATCGGCTGAGAAAGAAAT
TAGAGAAATGACACCCTTCACAATTGCCAGAAATTCTATAAAATATCTTG
GTGTAACACTAATCAAGCAAGTGAAAGATCTGTATGACAAGAACTTCAAG
TCCCTGTAGAAAGAAATTGAAGACCTCAGAAGATGGAAAGATCTCCTGTG
CTCATGGATCGGTAGGATTAACATAGTGAAAATGGGCATCTAACCAAAAG
CAATCTACAGATTCAATGCGATCCCCATCAGAATTCCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXACTTGCTTCCGCCACAGTCACTCAAGTGCTGGGATTCT
AACTGTTTGCCACCATACCCCGTGTCTTCCTGGAGGCTCTGAGGGGTGAT
GAGGACACACAAGAGCAATGACAATTCAGTTAAAAAAAATCGACTTTTCT
ACAAAGTCTGTCTCCTTCTTCTTTTGTCTTTAGTGGATATCTCTCCATAT
GGTTTTTTTACTTTTTGTTTTGGGGGGTTTTTTGGGAGGAGGGGNNNNNN
NNNNNNNTNNTTTTTTTTNNNNNTNTTTNTTTTTTTTTNNTTTTTTTTNN
GTTTTTTTTTTTNCNTTTTTCCTTTTCTGTTTTGCCCCCTTTTTTTTTTG
TTTTTTTTTTTTTCCCCCCCCCCCCGTTTTTCTTTTTTTTTTTTTTCCGC
CTTTTCCGTTTTTCCCCTTTCACCCCTTCCCCCTTTTTTTTTTCTTCATT
TTGTGTGTCCTCTGTTTTGTTTTTTTCCCTTTTTCTTTTTCCCATTTTTT
TTGTTGCCTTTTTTTTTTTTTTTTTCCCCTTTTTCCACTTATCTACTTTT
TTCATTTTTCCCATTTTATTATTTCACACTTTTTTGCGACCCCCGTTTTA
CCTATTTTCTTTCTAGCCCCCCGTTTCTAATATGACGGTTATATTTGATT
AACAATAATTGTTATTGCCAATTTAAACCCCTTACACACCTTTTTTTTTT
TTTTTTTACTTCTCCCCCTTTTTTCTATATGTAATACATTTTTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_i04.g1 MSMg01no358_i04.g1 CHROMAT_FILE:
MSMg01no358_i04.g1 PHD_FILE: MSMg01no358_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:48 2005
         (236 letters)



>mm_chr13_8612657_8613290
          Length = 634

 Score =  429 bits (222), Expect = e-125
 Identities = 229/232 (98%), Gaps = 2/232 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgcttccgccacagtcactcaagtgctgggattctaactgtttgccaccataccccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgcttccgccacagtcactcaagtgctgggattctaactgtttgccaccataccccg 260

                                                                       
Query: 61  tgtcttcctggaggctctgaggggtgatgaggacacacaagagcaatgacaattcagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcttcctggaggctctgaggggtgatgaggacacacaagagcaatgacaattcagtta 320

                                                                       
Query: 121 aaaaaaatcgacttttctacaaagtctgtctccttcttcttttgtctttagtggatatct 180
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaa--tcgacttttctacaaagtctgtctccttcttcttttgtctttagtggatatct 378

                                                               
Query: 181 ctccatatggtttttttactttttgttttggggggttttttgggaggagggg 232
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 379 ctccatatggtttttttactttttgtttttgggggttttttgggaggagggg 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 634
Length adjustment: 9
Effective length of query: 227
Effective length of database: 625
Effective search space:   141875
Effective search space used:   141875
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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