BAC Information

Click to search

BAC

Clone NameMSMg01-359J19
Chromosome13 (Build37)
Map Location 60,652,567 - 60,652,902
singlet/doubletsinglet
Overlap genenone
Upstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
Downstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359J19.T7 (MSMg01no359_j19.b1)MSMg01-359J19.TJ (MSMg01no359_j19.g1)
ACCAG468985AG468986
length778792
length of high quality
(start - end)		477 (42 - 518)383 (52 - 434)
definitionCHROMAT_FILE: MSMg01no359_j19.b1 PHD_FILE: MSMg01no359_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:08 2005CHROMAT_FILE: MSMg01no359_j19.g1 PHD_FILE: MSMg01no359_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTATTCGGAGAGGATCCGCGGAATTCAAGAAGGTGGACTTCAGA
AAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATT
CTCACCTGAGGAATACCAAATGGCAGAGAAGCACCTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGTTCAAAAATTCAGGTGACAGCAGATG
CTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATT
GCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAA
TTGGACATAGTACTACAGGAGGATCCCGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCC
TCAACAGAGGAATGGATACAGAATATGTGGTACATCTACACAATGGAGTA
CTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGA
TGGACCCGGAGGGTATTTTCCCGAGTGAGGTTACAATTTCTCAAGGGAAC
CCCCCATAATGCCCCCCCGGTTAATGGGATTTAATCCCCAACCCAAGGAA
TCCCTGAATAATAAAAAAATTTCTTTAACCATATACTTCACCAAAAACAT
AACCCATTTTGCACCACCCTCCCCTCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTGTGACAGCTTCATAGGGCTTGTGGGTAATTGAGAACGGGTGTGGCTCT
GGGCTACAGATCTCCACAGGAGTTGTTCTGAGGTAGACTCTTTGCTGTCA
CTAAGTACTGTCTGGTCTTGGGATGTATAGACTGCCAGTTGCCAATGACT
TTTACTCATTCTGGCAAGTGGAGAACACTGGACATCTTTATTTTCAGTTG
ATGAGATCAGCAATACACTCTTGCCATCCTGCTTCAGAGTGCTGTCAGCC
CTGACTGTGCCAGGGTTGAGTCTTCAAAGGCTATAGCCGAATCATAGTTT
GAAATTGTATGCCTGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGA
CTGCTCTTCCAGAGGTCCTGAGTTAAATTCCCAGCAACCACATGGTGTCT
CACAACCATCTGCAATGGTATTTGATGCCCTCTTCTGGTGTGTCTGAACA
CCGCGATAGTGTACTTCTCTTACATGAAAAACATGTATGCTTGCATATTT
TCCCCCCTTTTTATCTCCACCTTGGAATGTTTTCTTTGATTCTCCCCCCG
TCCCCCGATTTTATGCTTTATTATTCTTAAACCCTCCATTTTTTTGCCTT
TTCACCTTGCCTCCTTCCCTTCCTCTTTTTTTTTTTCTTTTATTTCCCCC
TTTCCCTTTTTTTCTTGTTTATCCCATTTGCTTATCCTCGTCCTGTTTCC
TCCCTTTCCCTCCCTATACCCCTTCGCTTTATCCTCCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_j19.g1 MSMg01no359_j19.g1 CHROMAT_FILE:
MSMg01no359_j19.g1 PHD_FILE: MSMg01no359_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:08 2005
         (383 letters)



>mm_chr13_60652564_60653346
          Length = 783

 Score =  596 bits (308), Expect = e-174
 Identities = 331/342 (96%), Gaps = 6/342 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgacagcttcatagggcttgtgggtaattgagaacgggtgtggctctgggctacagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgtgacagcttcatagggcttgtgggtaattgagaacgggtgtggctctgggctacagat 280

                                                                       
Query: 61  ctccacaggagttgttctgaggtagactctttgctgtcactaagtactgtctggtcttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctccacaggagttgttctgaggtagactctttgctgtcactaagtactgtctggtcttgg 220

                                                                       
Query: 121 gatgtatagactgccagttgccaatgacttttactcattctggcaagtggagaacactgg 180
           ||||||||||||||||||      |||||||||| |||||||||||||||||||||||||
Sbjct: 219 gatgtatagactgccagt------tgacttttacccattctggcaagtggagaacactgg 166

                                                                       
Query: 181 acatctttattttcagttgatgagatcagcaatacactcttgccatcctgcttcagagtg 240
           ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 165 acatctttactttcagttgaggagatcagcaatacactcttgccatcctgcttcagagag 106

                                                                       
Query: 241 ctgtcagccctgactgtgccagggttgagtcttcaaaggctatagccgaatcatagtttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 ctgtcagccctgactgtgccagggttgagtcttcaaaggctatagccgaatcatagtttg 46

                                                     
Query: 301 aaattgtatgcctgggctggagagatggctcagcagttaaga 342
           ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 45  aaactgtatgcctgggctggagagatggctcagcagttaaga 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |