Query= MSMg01no359_o02.b1 MSMg01no359_o02.b1 CHROMAT_FILE:
MSMg01no359_o02.b1 PHD_FILE: MSMg01no359_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:28 2005
(447 letters)
>mm_chr13_45042588_45043435
Length = 848
Score = 799 bits (413), Expect = 0.0
Identities = 434/443 (97%), Gaps = 5/443 (1%)
Strand = Plus / Plus
Query: 4 ggaattcagtagcactacccagtggcttggaatgtacagcaagccctcaaatgtcacact 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtagcactacccagtggcttggaatgtacagcaagccctcaaatgtcacact 263
Query: 64 tctgacagttacagtaactggcagccgagccctgctttagaactgcatagccca-aaacg 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 264 tctgacagttacagtaactggcagccgagccctgctttagaactgcatagcccataaacg 323
Query: 123 ttctctgctgttcttcttcaatcaacctttctacattctcttttccccttttaggcaaat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttctctgctgttcttcttcaatcaacctttctacattctcttttccccttttaggcaaat 383
Query: 183 acactaaaaaaacaaaacaaaacaaacaaacaaacaaaaaaaacaacttcctttaaccta 242
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 384 acactaaaaaaacaaaacaaaacaaacaaacaaac----aaaacaacttcctttaaccta 439
Query: 243 acactctctctcccattctccttttttcctttagccttacttttgttgttttgttaattt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acactctctctcccattctccttttttcctttagccttacttttgttgttttgttaattt 499
Query: 303 gagactggttcttgctttgttgccagactagtggactcatgggctggagcatctgaagga 362
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gagactggttcttgctttgctgccagactagtggactcatgggctggagcatctgaagga 559
Query: 363 aggagcccacctcacaggcacatgccagcacgtgcagctcaccctaagctcccagatctt 422
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aggagctgagctcacaggcacatgccagcacgtgcagctcaccctaagctcccagatctt 619
Query: 423 ggatctgctcttctccaccctac 445
|||||||||||||||||||||||
Sbjct: 620 ggatctgctcttctccaccctac 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 848
Length adjustment: 10
Effective length of query: 437
Effective length of database: 838
Effective search space: 366206
Effective search space used: 366206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_o02.g1 MSMg01no359_o02.g1 CHROMAT_FILE:
MSMg01no359_o02.g1 PHD_FILE: MSMg01no359_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:28 2005
(391 letters)
>mm_chr13_45215001_45215791
Length = 791
Score = 623 bits (322), Expect = 0.0
Identities = 331/334 (99%)
Strand = Plus / Minus
Query: 58 attcattctgtgtattattcatttagtgagcatccatggagcccgtgctctgtaataagt 117
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 791 attcattctgtgtattattcatttagtgagcatccatggagcctgtgctctgtaataagt 732
Query: 118 aatgtcctaggcgtactaagaataatatccaccttatctgctgaatcttgttttatggtg 177
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 731 aatgtcctaggcgtactaagaacaatatccaacttatctgctgaatcttgttttatggtg 672
Query: 178 tcctggtcaaggaagccagggacacaattagtaagttttaacttgtttgttatgtgagta 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tcctggtcaaggaagccagggacacaattagtaagttttaacttgtttgttatgtgagta 612
Query: 238 gcatgatgaactctggtgcccaggatttagatcaaccctttgtcccatgtatctgtaatg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gcatgatgaactctggtgcccaggatttagatcaaccctttgtcccatgtatctgtaatg 552
Query: 298 ggtttgctatctcttccttgtaccgatattggctcccatgacatcacagtgccagtatta 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ggtttgctatctcttccttgtaccgatattggctcccatgacatcacagtgccagtatta 492
Query: 358 aactaatctttttatttaacatgacctggcaatt 391
||||||||||||||||||||||||||||||||||
Sbjct: 491 aactaatctttttatttaacatgacctggcaatt 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space: 298724
Effective search space used: 298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
