Query= MSMg01no360_c11.b1 MSMg01no360_c11.b1 CHROMAT_FILE:
MSMg01no360_c11.b1 PHD_FILE: MSMg01no360_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:50 2005
(341 letters)
>mm_chr13_19386212_19386950
Length = 739
Score = 540 bits (279), Expect = e-158
Identities = 313/341 (91%), Gaps = 28/341 (8%)
Strand = Plus / Minus
Query: 1 tccttctatatctaagcagacaactttcttgtggaaaatttacatatatatatttatcta 60
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 404 tccttctatatctaagcagacaactttcttgtggaaaatttac--atatatatttatcta 347
Query: 61 attctgatttttcactgtagtccatagatatttccactttagtactaatcttatccttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 attctgatttttcactgtagtccatagatatttccactttagtactaatcttatccttcc 287
Query: 121 tcagtgctaaaactttttctctttgtaatgtaatgttttaaattcattctttgagaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tcagtgctaaaactttttctctttgtaatgtaatgttttaaattcattctttgagaatct 227
Query: 181 tatgcgtgaatggaatgctaataaacttctctctctctctctctctctctctctctctct 240
|||||||||||||||||||||||||| ||||||||||
Sbjct: 226 tatgcgtgaatggaatgctaataaac------------------------ctctctctct 191
Query: 241 ctctctctctttctctctctctctctctctctctgcaaaagcactaagagaagatagctg 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ctctctctc--tctctctctctctctctctctctgcaaaagcactaagagaagatagctg 133
Query: 301 tccccttagggcctgaagttcctttagaaaccccacttgca 341
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tccccttagggcctgaagttcctttagaaaccccacttgca 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 739
Length adjustment: 9
Effective length of query: 332
Effective length of database: 730
Effective search space: 242360
Effective search space used: 242360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_c11.g1 MSMg01no360_c11.g1 CHROMAT_FILE:
MSMg01no360_c11.g1 PHD_FILE: MSMg01no360_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:50 2005
(242 letters)
>mm_chr13_19146690_19147331
Length = 642
Score = 424 bits (219), Expect = e-123
Identities = 236/242 (97%)
Strand = Plus / Plus
Query: 1 aagaaaagnttcttcagaaagttgtggccaaaggacatctctcacatagaacaagcactc 60
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 aagaaaagtttcttcagaaagttgtggccaaaggacatctcccacatagaacaagcactc 260
Query: 61 agtggtttggggaaacaataagaaaccataggggtgatggcttttcatctaaggaaggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtggtttggggaaacaataagaaaccataggggtgatggcttttcatctaaggaaggct 320
Query: 121 agtaaagaaagacaggtggaggaatgtgttctatttactttgcacttttctagaattttc 180
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 agtaaagaaacacaggtagaggaatgtgttctatttactttgcacttttctagaatcctc 380
Query: 181 tttaccagaaatttctctgtgtttaaaaatatatgtcactatctgcatatattttaatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaccagaaatttctctgtgtttaaaaatatatgtcactatctgcatatattttaatct 440
Query: 241 ct 242
||
Sbjct: 441 ct 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
