Query= MSMg01no360_j01.b1 MSMg01no360_j01.b1 CHROMAT_FILE:
MSMg01no360_j01.b1 PHD_FILE: MSMg01no360_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:20 2005
(603 letters)
>mm_chr13_100320890_100321896
Length = 1007
Score = 847 bits (438), Expect = 0.0
Identities = 450/456 (98%), Gaps = 4/456 (0%)
Strand = Plus / Minus
Query: 152 ttttggtctgcataggaggagctagccgaaagcagtaacagttccttagaatttttcttt 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 ttttggtctgcataggaggagctagccgaaagcagtaacagttccttagaatttttcttt 948
Query: 212 agcaataactgagctgtctggagaggagaaacagatcttcaagaatttttttctaacagg 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 agcaataactgagctgtctggagaggagaaacagatcttcaagaatttttttctaacagg 888
Query: 272 atttctgatttggtcagaaaatccatggagagcgaacatggctcttttaaaattttttat 331
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 887 atttctgatttggtcagaaaatccatggagagcgaacatagctcttttaaaattttttat 828
Query: 332 aactcttttaaaaaatttttctcacaggacttttgaccttggtcaatgagaaatcccgag 391
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 aactcttttaaaaattttttctcacaggacttttgaccttggtcaatgagaaatcccgag 768
Query: 392 aatacttagagagctagcagctctttccaaacttctctagcagcatccaaagatgaagag 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 aatacttagagagctagcagctctttccaaacttctctagcagcatccaaagatgaagag 708
Query: 452 cgaacagagctcttttagaattttttccagctttctaaatttgattggaaaacccaataa 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 cgaacagagctcttttagaattttttccagctttctaaatttgattggaaaacccaataa 648
Query: 512 ttacttttggagtttttctaccaggttttttgacttggttggaagatccaagga----tt 567
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 647 ttacttttggagtttttctaccaggttttttgacttggttggaagatccaaggatttttt 588
Query: 568 tttttttttttaatagcagtttttctgactttggtc 603
||||||||||||||||||||||||||||||||||||
Sbjct: 587 tttttttttttaatagcagtttttctgactttggtc 552
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1007
Length adjustment: 10
Effective length of query: 593
Effective length of database: 997
Effective search space: 591221
Effective search space used: 591221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_j01.g1 MSMg01no360_j01.g1 CHROMAT_FILE:
MSMg01no360_j01.g1 PHD_FILE: MSMg01no360_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:21 2005
(431 letters)
>mm_chr13_100122800_100123630
Length = 831
Score = 826 bits (427), Expect = 0.0
Identities = 430/431 (99%)
Strand = Plus / Plus
Query: 1 agactgcccggaacttttccattgtgtaacaggaagtaactgctaccgcctctgtttcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agactgcccggaacttttccattgtgtaacaggaagtaactgctaccgcctctgtttcat 260
Query: 61 agatgcacatttttgtgtatggcatgactgcgttggtaagggttgagctctgattctgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatgcacatttttgtgtatggcatgactgcgttggtaagggttgagctctgattctgag 320
Query: 121 cagggagactgctgactgctccaggtgttcctgtggctgcatttccgtgggtcggacagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagggagactgctgactgctccaggtgttcctgtggctgcatttccgtgggtcggacagt 380
Query: 181 agatggcagtgtggtccttgcgagaaacacccttccatctgcgctggggcgcaggcctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatggcagtgtggtccttgcgagaaacacccttccatctgcgctggggcgcaggcctat 440
Query: 241 cgggaaatgtgcgctcatgtggagcgtcgtgattggacatcgcgctgggagggccgtgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgggaaatgtgcgctcatgtggagcgtcgtgattggacatcgcgctgggagggccgtgag 500
Query: 301 gtgcttgggtcgggttcgctgattggaggaaggaggagggccgatatgaggcatttgctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgcttgggtcgggttcgctgattggaggaaggaggagggccgatatgaggcatttgctc 560
Query: 361 ctgtggtccccattggtgccgctgcgggtgtggcgtccttggctccgcccgccgtccctg 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 ctgtggtccccattggtgccgctgcgggtgtggcgtccttggttccgcccgccgtccctg 620
Query: 421 gggagggctgt 431
|||||||||||
Sbjct: 621 gggagggctgt 631
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space: 346884
Effective search space used: 346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
