BAC Information

Click to search

BAC

Clone NameMSMg01-360K22
Chromosome13 (Build37)
Map Location 75,884,251 - 75,884,650
singlet/doubletsinglet
Overlap geneEll2
Upstream geneCast, LOC622204, EG544954, Pcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986
Downstream geneLOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, Mctp1, LOC666603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360K22.T7 (MSMg01no360_k22.b1)MSMg01-360K22.TJ (MSMg01no360_k22.g1)
ACCAG469799AG469800
length784790
length of high quality
(start - end)
412 (46 - 457)399 (71 - 469)
definitionCHROMAT_FILE: MSMg01no360_k22.b1 PHD_FILE: MSMg01no360_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:29 2005CHROMAT_FILE: MSMg01no360_k22.g1 PHD_FILE: MSMg01no360_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGATTCCACTGAATGGCTGAGAAGCACCTAAAGAAATGTTC
AACATCCTTAGTCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTTC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGTGGATGTGGAGAAAGAACACTCCTCCACTGCTGGTGGGACTG
AAAACTGGTACAACCACTCTAGAAATCAGTTTGGCGGTACCAGAAAATTC
GAAATAGCTATACCACTCCTGGGCATATACCCAGAAGATGCTCCAACTTG
TAATAAGAACATATGCCCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATTTAAACAATGGAGTACTGCTCACCTAATTAAAAACA
TGAATTTATGAAATTCTTGGACAAGTTGATGGATCTGGAAGAAAACTTCC
TGAATGGGGTAACCCCACCCCAAAAAACACCATTGTTATGCCTCCTCTGA
AATTGGTAATTATCCCCCAACCTCTCAAAATTCTCAATACAATTTCCATA
CCCCTTTATACTCTTAAAAAAAGATAAACAAGCGTTGTGGAATTTCCCCC
CCTTCCCTAAGGGGATAACAAAATCCTTGTTTGTTTTTTCAAACCCCTCT
ACCTTTCTTAAACTACTCTACAAATTTTCCCTTT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGACAGGGTTTCTCTGAGTAGCCCTGGCC
ATCCCGGAACTTATTCTATAGACCTGACTGGCCTTGAACTCAGAGATCTG
CCTCCTGACTCCCGAGTGCTAGGATTAGAGGCATGTGCCACCACTGCCTA
GCAAGACTTCTTTTAGTTTTATTGCACAGGCTGCTAGAAACTAAACATTA
ATTGCAATAAAAATGTAAGAAAAAAAATAGAAGACAAAAGAAAAGAAAGG
CAAAAGGCTAGATACCTCCCTAGGTGCCATGACTCCCTTGCCGACTTTGA
CTCAGTGAGCCATTTGCTTGCTTGTGGGGTTGTTTGTGATAAAGTGGGAG
CCCGTGAGTAGGAGTTTAATACCCAGTTCCCCATGTATAAGGCTTTGACG
CTGGGGCAAAGTACTAACACCCATCTCTGTGTGTGGCTCATCAAGTCTGT
AACAACTGCTGTTGGAATGAGAGCTTGAACAGGAACTACTTTTCCTGGAC
GTTCCCAGTTATTATTTCCCCCCCCCTTTAACCTCCCCGCAGAAATTATT
GGGGTTGGTTTAAAAAAAACTCCCCCACCACCCCCGGTTTTTAACCGATT
TTGTTAAATACTATTCCACCCCTTTTTCGCTCCCTCCCCTTCCTTTTTTC
CCGGGGCCCCCCGGTTTTCTTCTTTTTCCCCTCTAGCATTTCTCTGTTCC
CAACCCACTTTTTTTCTTCTCTTTGTCTTCTCTTTTCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_k22.g1 MSMg01no360_k22.g1 CHROMAT_FILE:
MSMg01no360_k22.g1 PHD_FILE: MSMg01no360_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:29 2005
         (399 letters)



>mm_chr13_75884052_75884850
          Length = 799

 Score =  743 bits (384), Expect = 0.0
 Identities = 396/400 (99%), Gaps = 1/400 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagacagggtttctctgagtagccctggccatcccggaacttattctatagacctgactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 200 aagacagggtttctctgagtagccctggccatcccggaacttattctatagacctgacta 259

                                                                       
Query: 61  gccttgaactcagagatctgcctcctgactcccgagtgctaggattagaggcatgtgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gccttgaactcagagatctgcctcctgactcccgagtgctaggattagaggcatgtgcca 319

                                                                       
Query: 121 ccactgcctagcaagacttcttttagttttattgcacaggctgctagaaactaaacatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 320 ccactgcctagcaagacttcttttagttttattgcacaggctgctagaaactagacatta 379

                                                                       
Query: 181 attgcaataaaaatgtaagaaaaaaaa-tagaagacaaaagaaaagaaaggcaaaaggct 239
           ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 380 attgcaataaaaatgtaagaaaaaaaaatagaagacaaaagaaaagaacggcaaaaggct 439

                                                                       
Query: 240 agatacctccctaggtgccatgactcccttgccgactttgactcagtgagccatttgctt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agatacctccctaggtgccatgactcccttgccgactttgactcagtgagccatttgctt 499

                                                                       
Query: 300 gcttgtggggttgtttgtgataaagtgggagcccgtgagtaggagtttaatacccagttc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcttgtggggttgtttgtgataaagtgggagcccgtgagtaggagtttaatacccagttc 559

                                                   
Query: 360 cccatgtataaggctttgacgctggggcaaagtactaaca 399
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cccatgtataaggctttgacgctggggcaaagtactaaca 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)