BAC Information

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BAC

Clone NameMSMg01-360L06
Chromosome13 (Build37)
Map Location 59,848,812 - 60,045,458
singlet/doubletdoublet
Overlap geneIsca1, Zcchc6
Upstream geneLOC435361, Ntrk2, LOC100041533, Agtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik
Downstream geneLOC100041267, Gas1, EG328264, Dapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360L06.T7 (MSMg01no360_l06.b1)MSMg01-360L06.TJ (MSMg01no360_l06.g1)
ACCAG469815AG469816
length775754
length of high quality
(start - end)
352 (47 - 398)354 (78 - 431)
definitionCHROMAT_FILE: MSMg01no360_l06.b1 PHD_FILE: MSMg01no360_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:31 2005CHROMAT_FILE: MSMg01no360_l06.g1 PHD_FILE: MSMg01no360_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,848,812 - 59,849,142)(60,045,105 - 60,045,458)
sequence
TTTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCG
CGGAATTCTTGCTTCTGCCTGGATTTTTAGTCTCAGGCACAAATGTCTTC
CAGTACATGTCACCTATGAAATAGCTTCTTTTCACTCAGATTAGGAAGAA
AACTTCCTTTCTACATTTATAAATGCTGATGAGGACATTTTCATGTTCCT
GACAGTACTTTCATGTCTTTAATCAGGGTGGACTCAAATCGTCAAACTCA
TATAAAATATAGATTATGCTAAATGGATACAATTGCATCTTCAGGCATTC
TTTGGTTTAATTTATTCCATTTATGTTTCTGAAATTAGCGAAACTTCAAG
TGAACTGAGTTACACACACACACACAGACTCAGACACAGAGACACACTGA
TACTCAGACACACATAGACACATACAGATACACACTGACACATGCAGATA
CACATATGCATACCGATACTCAGACCCTCAGACCGACACATATAGACTCT
CATACTCAGAGACCTAGAGACTCCCTGATTTATAGACACACTTGCCCACT
GATTCTTTCTGATCCATTGACACCCACACCCTATCTGGAACTTTCTCCTC
TCCAATCTTTTGTACCGCTCTTTGGGTGGAGAAGAATCCCTTTACTTCCC
TCTCCTTTCCTTTACTCCCCCCACACCATAACTATTTGTTTATCTTCATA
CTCCTTCCACTCATATTTATTAGCCCTCCTTCTACCTGCTCATATTTATT
TCACCTACTTTTTCCTCTCTTGTGC
NTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGTGAGTATTCTTTTGGAGA
ATATTGTTTCTCCTCAGTCATTATTCCTCTGACCTAACTCTGGTCCAGCA
TTACAGGCAACTCAGTTGGAGGTAGAGTTAATTATGCATTCGTTGGAGAT
TCTACTCCCCAGAGCTAGGCTGGGCAGCTGCAGATCTCCACACCTGTTGG
TCACATTACATGTCCAGCCTCACCCAGCTCAGGAAGTTATTATTCCTTCC
CAATTCCTTCCTGCAGCATTTGCCAAGCAACAGCGGTACTCAACACTCAC
TTCAACTAGAATTACAATGTATTCACACAGAGTGCCATCCAAGGCTCAGC
CCTGCCTGCCTGATAACTCACAGACGCTCACAGACACTAGAGGAGTAAGC
CGGGTCATTCTCCCCACTGAAGCCCTTAGGCTTTGAGTCTAAGGGAAAGA
TACATATGCCTGTTACTTCCTTTTAGACTTCTTTCTTCTGTTTATAATAA
GTTTCTTGAATGGGCTCTTTGAATGTGCCCTTTCTTTTTCTCACCTTCTT
TTTACTATTTGCCCCATTATTACTTCTTAATTTTGTTTTATCGCGAACAA
AAAATTTGCTTTAAGTTTTTCCTTTTGTCTCTTTTCGTTACCTTTCATTC
TCTTTCCTGTTTCCAATCGCCTCTTTTTTTCGTTCATTTTCTTCTCCTTT
TTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_l06.b1 MSMg01no360_l06.b1 CHROMAT_FILE:
MSMg01no360_l06.b1 PHD_FILE: MSMg01no360_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:31 2005
         (352 letters)



>mm_chr13_59848598_59849349
          Length = 752

 Score =  520 bits (269), Expect = e-152
 Identities = 321/347 (92%), Gaps = 17/347 (4%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcttgcttctgcctggatttttagtctcaggcacaaatgtcttccagtacatgtc 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ggaattcttgcttctggctggatttttagtctcaggcacaaatgtcttccagtacatgtc 274

                                                                       
Query: 66  acctatgaaatagcttcttttcactcagattaggaagaaaac-ttcctttctacatttat 124
           |||||||||||||||||||||||||||||||          | |||||||||||||||||
Sbjct: 275 acctatgaaatagcttcttttcactcagatt----------cattcctttctacatttat 324

                                                                       
Query: 125 aaatgctgatgaggacattttcatgttcctgacagtactttcatgtctttaatcagggtg 184
           ||||||||||||| |||||||||||||||||||||||||||||  ||||||||| |||||
Sbjct: 325 aaatgctgatgagaacattttcatgttcctgacagtactttcacatctttaatcggggtg 384

                                                                       
Query: 185 gactcaaatcgtcaaactcatataaaatatagattatgctaaatggatacaattgcatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gactcaaatcgtcaaactcatataaaatatagattatgctaaatggatacaattgcatct 444

                                                                       
Query: 245 tcaggcattctttggtttaatttattccatttatgtttctgaaattagcgaaacttcaag 304
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 tcaggcattctttggtctaatttattccatttatgtttctgaaattagtgaaacttcaag 504

                                                          
Query: 305 tgaactgagttacacacacacacacagactcagacacagagacacac 351
           | |||||||||||||| |||||||  |||    ||||||||||||||
Sbjct: 505 ttaactgagttacacagacacaca--gac----acacagagacacac 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no360_l06.g1 MSMg01no360_l06.g1 CHROMAT_FILE:
MSMg01no360_l06.g1 PHD_FILE: MSMg01no360_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:31 2005
         (354 letters)



>mm_chr13_60044905_60045658
          Length = 754

 Score =  630 bits (326), Expect = 0.0
 Identities = 347/354 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgtgagtattcttttggagaatattgtttctcctcagtcattattcctctgacctaa 60
           ||||||||||||||||| ||||||||||||||||  || |||||||||||||||||||||
Sbjct: 554 ttctgtgagtattctttaggagaatattgtttcttttcggtcattattcctctgacctaa 495

                                                                       
Query: 61  ctctggtccagcattacaggcaactcagttggaggtagagttaattatgcattcgttgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctctggtccagcattacaggcaactcagttggaggtagagttaattatgcattcgttgga 435

                                                                       
Query: 121 gattctactccccagagctaggctgggcagctgcagatctccacacctgttggtcacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gattctactccccagagctaggctgggcagctgcagatctccacacctgttggtcacatt 375

                                                                       
Query: 181 acatgtccagcctcacccagctcaggaagttattattccttcccaattccttcctgcagc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 374 acatgtccagcctcacccagctcaggaagttattattccttcccaattccttcctgcaac 315

                                                                       
Query: 241 atttgccaagcaacagcggtactcaacactcacttcaactagaattacaatgtattcaca 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 314 atttgccaagcaacagcggtacacaacactcacttcaactagaattacaatgtatccaca 255

                                                                 
Query: 301 cagagtgccatccaaggctcagccctgcctgcctgataactcacagacgctcac 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cagagtgccatccaaggctcagccctgcctgcctgataactcacagacgctcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)