Query= MSMg01no361_m23.b1 MSMg01no361_m23.b1 CHROMAT_FILE:
MSMg01no361_m23.b1 PHD_FILE: MSMg01no361_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:57 2005
(536 letters)
>mm_chr13_114279417_114280352
Length = 936
Score = 926 bits (479), Expect = 0.0
Identities = 520/538 (96%), Gaps = 9/538 (1%)
Strand = Plus / Plus
Query: 7 attcttatgacttcccggacactgtgtcttctgtagtggatcttaacaggaaatatcttt 66
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attcttatgacttcaaggacactgtgtcttctgtagtggatcttaacaggaaatatcttt 266
Query: 67 aaaccagcaagagaggtttctgaaaagaaaacaggaaagccagctttatgattcctcata 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaaccagcaagagaggtttctgaaaagaaaacaggaaagccagctttatgattcctcata 326
Query: 127 tctaaaatggggacagacctcccttgccgagtaattgtgggtcgtaccttaaagtcccta 186
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 327 tctaaaatggggacagacctcccttgctgagtaattgtgggtcgtaccttaaagtcccta 386
Query: 187 gaataaaacatgcattaagcagctgtagtgtctgactcaatcagtggttctcaacctgtg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaataaaacatgcattaagcagctgtagtgtctgactcaatcagtggttctcaacctgtg 446
Query: 247 ggtctcgaccccaacaaccctttcccaagggctgcctaagaccattagaaaacacagata 306
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 447 ggtctcgaccccaacaaccctttcccaagggctgcgtaagaccattggaaaacacagata 506
Query: 307 tctacattacaatttataacaatagcaaaattacagttatgacatcacaatgaaaaataa 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tctacattacaatttataacaatagcaaaattacagttatgacatcacaatgaaaaataa 566
Query: 367 ttttatggtgggggagggggcgtcaccgcaagatgaggcactgtataaaagggtcacagc 426
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 567 ttttatggtgggggagggggcgtcaccgcaagatgaggcactttataaaagggtcacagc 626
Query: 427 attaggcagattgagaatcactagtttaagcagtgctgctggcctgggataatgcaaagt 486
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 627 attaggcagattgagaatcactagtttaagcagtgctgctggcctgggataatggaaa-t 685
Query: 487 actgtg------tgt--actttctagaacagacctggttaanacaagatcagagacac 536
|||||| ||| ||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 686 actgtgggacagtgtgaactttctagaacagacctgcttaagacaagatcagagacac 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_m23.g1 MSMg01no361_m23.g1 CHROMAT_FILE:
MSMg01no361_m23.g1 PHD_FILE: MSMg01no361_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:57 2005
(480 letters)
>mm_chr13_114477796_114478675
Length = 880
Score = 868 bits (449), Expect = 0.0
Identities = 467/473 (98%), Gaps = 2/473 (0%)
Strand = Plus / Minus
Query: 9 ggagtctcgaatggctgagaaacgcctaaagaattgttcaacatccttagtcatcaggga 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 ggagtctcgaatggctgagaaacgcctaaagaattgttcaacatccttagtcatcaggga 821
Query: 69 aatgcaaatcaaagtgacctgagattccacctcacaccagtcagaatggctaagatcaaa 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 aatgcaaatcaaagtgacctgagattccacctcacaccagtcagaatggctaagatcaaa 761
Query: 129 cactcaggtgacagcagatgctgtcgaggatgtggaggaagaggaacactcctccattgt 188
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 760 cactcaggtgacagcagatgttgtcgaggatgtggaggaagaggaacactcctccattgt 701
Query: 189 tggtgggattgccaggcctggcagtaagagatgattttcaagggtgactagacaagggga 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tggtgggattgccaggcctggcagtaagagatgattttcaagggtgactagacaagggga 641
Query: 249 cagaaggtaaccaggaatccttccagcttctttaagagaaataatctttgctgggtctgg 308
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 640 cagaaggtaaccaggaatccttccagcttctttaagagaaataatctttgcttggtctgg 581
Query: 309 aatggccttgtatggaggaatgcaggaaagtcagttacctcagcctcc-atctccccctt 367
||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||
Sbjct: 580 aatggccttgtatggaggaatgcaggaaaatcagttacctcagcc-cctatctccccctt 522
Query: 368 tccctgatctccttttagggtcacacattggctggattcagttggaagtcacaacaccta 427
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tccctgatctccttttagggccacacattggctggattcagttggaagtcacaacaccta 462
Query: 428 caatgctgttgatacaatcagggaagcaaagggaaggcccttgccccacccag 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 caatgctgttgatacaatcagggaagcaaagggaaggcccttgccccacccag 409
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
