BAC Information

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BAC

Clone NameMSMg01-361O23
Chromosome13 (Build37)
Map Location 62,159,137 - 62,159,598
singlet/doubletsinglet
Overlap geneLOC100041420
Upstream geneCtsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180
Downstream geneLOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361O23.T7 (MSMg01no361_o23.b1)MSMg01-361O23.TJ (MSMg01no361_o23.g1)
ACCAG470742AG470743
length770777
length of high quality
(start - end)		349 (74 - 422)455 (77 - 531)
definitionCHROMAT_FILE: MSMg01no361_o23.b1 PHD_FILE: MSMg01no361_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:07 2005CHROMAT_FILE: MSMg01no361_o23.g1 PHD_FILE: MSMg01no361_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:07 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NGGTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGAAATGTATCGTTTTACAGGCATTAAGGAAACAGAATAGG
ATCCAATTCAGCTAGTCAATCTTAATACATGCATGGTACTCTTCTCTCAT
TACAAAAAGCATAAATTACATCCGAGGTACACCTGACATGCATTGACAGG
TGTACATGTGGGCTCGTACTGCTGACAAATGAGTCTAAAAAACATACAGA
TTCCATTAGAAAATTTTCAATAAAATGAAATTTTTCGATTTTTCTTTTCT
CTTTCTTTTAAGATTTTTTTTTTGAGACAGAATGTCACTATAAAACATGT
CTAAGAACTCACTATGTACACGACCCTGGCCTAAAACTCAGAGACAGGCC
TACCACCATCTCTAATGTAACACGCTTATAGGTATGCAATTCTAAGATGA
GCTGAGATGTTTTTTCAATGACTTACATTTGAACCAAACAATGAATGACA
AGGTAAGGACTAAAGAGTAAACCTCATGGTTTTGATGTTCAGTAATAAGT
GCTAANATTTAATAGTAATAATTTAAACTGGCAAATCATTTCATATGTTT
TCAAAACTGGGTTTGTTCTATTTTTGCTTTGGTATTTCTTCCATGGAAAA
ATTGTTCCACTGTGTTTGTGGAATACACCTGTGCCCTGGATGTAAGTATC
ACGAAAAAACCCCTTAAAGTTGCCATAATCACTTCCCAATGGGAGTCTTA
AAGATAACCCCACGAGGTTT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGCATAAGCTGCAGACCAGCTGT
GACATACCAGCACTACTGTATTCTTCAACTTTCCCTTCATATATAGTCTT
TGTTTTACTAGTTGGACCACATTCTCTGAGCTATTCTTTTTTTTTAAGAT
TTGTTTATTTATTATGTATAAGTATACTGTAGCTATTTTCAGACACATTA
TCTCTCTTTCCGGCCTCAAATACTCTGGCCCTGCTCGCTCTGGCCCACAG
ATTGATTGATTGATTGATTGATTGATTGATTGATTTTATGTAAATACACT
GTAGCTGTCTTCAGACACCCCAGAGGAGGGCATCAGATGACATTACAGAT
GGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAATTCAGGACCTTCAGA
AGAACAGTCAGTGGCCCTTACCGGCTGAGCAATGTTTCCAGCTCTGCGGT
GAGCCATTCTTACAAATCCACTATCTGCATGCATAGAAAGATCCATGCTA
TGAGTTCTGTTCCCATGTANNAACTTTACTAATACAGATATGGTTTTTCA
CCTTTCCACGAAAGAAGATGTGGCTGCCTATCATAAGAGGCCCTAAGGAA
TGGAAACCCCCCCCGCTTTTGTTCCCAGGGGCTTGGAACTCCTGTTGAAA
GGGGAAAAAACCTTCTCTCCCGGGGACCCAATGGGGGGGAGTGGAAAATC
CTCTTTTTCCCTTCTAGGGACGCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_o23.g1 MSMg01no361_o23.g1 CHROMAT_FILE:
MSMg01no361_o23.g1 PHD_FILE: MSMg01no361_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:07 2005
         (455 letters)



>mm_chr13_62158937_62159791
          Length = 855

 Score =  603 bits (312), Expect = e-177
 Identities = 422/462 (91%), Gaps = 7/462 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcataagctgcagaccagctgtgacataccagcactactgtattcttcaactttccct 60
           ||||||| ||||  ||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct: 201 tggcatatgctgtggaccagctgtgacatacaagcactactgtattcttcaacttttctt 260

                                                                       
Query: 61  tcatatatagtctttgttttactagttggaccacattctctgagctattct------ttt 114
           || |||||||||||||||||||||||||||||||||||| ||||| |||||      |||
Sbjct: 261 tcgtatatagtctttgttttactagttggaccacattctgtgagccattcttttctcttt 320

                                                                       
Query: 115 tt-tttaagatttgtttatttattatgtataagtatactgtagctattttcagacacatt 173
           || |||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 321 ttctttaagatttatttatttattatgtataagtacactgtagctgttttcagacacatt 380

                                                                       
Query: 174 atctctctttccggcctcaaatactctggccctgctcgctctggcccacagattgattga 233
           ||||||||| ||||||||| || |||||||||||||  |||||||||||||||| ||| |
Sbjct: 381 atctctcttcccggcctcagatgctctggccctgctttctctggcccacagatttattta 440

                                                                       
Query: 234 ttgattgattgattgattgattgattttatgtaaatacactgtagctgtcttcagacacc 293
           || ||| ||| ||| ||| ||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 441 tttatttatttatttatttatttatttaatgtaaatacactgtagctgtcttcagacacc 500

                                                                       
Query: 294 ccagaggagggcatcagatgacattacagatggttgtgagccaccatgtggttgctggga 353
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagaggagggcatcagatcacattacagatggttgtgagccaccatgtggttgctggga 560

                                                                       
Query: 354 tttgaattcaggaccttcagaagaacagtcagtggcccttaccggctgagcaatgtttcc 413
           |||||||||||||||||||||||||||||||||| | |||||| |||||||||||| |||
Sbjct: 561 tttgaattcaggaccttcagaagaacagtcagtgtctcttacctgctgagcaatgtctcc 620

                                                     
Query: 414 agctctgcggtgagccattcttacaaatccactatctgcatg 455
           |||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 621 agctctgctgtgagccattcttacaaattcactatctgcatg 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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