BAC Information

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BAC

Clone NameMSMg01-361P02
Chromosome13 (Build37)
Map Location 32,792,022 - 32,792,571
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxc1, 4930548F15Rik, Gmds, LOC666212
Downstream geneWrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361P02.T7 (MSMg01no361_p02.b1)MSMg01-361P02.TJ (MSMg01no361_p02.g1)
ACCAG470748AG470749
length740739
length of high quality
(start - end)
308 (51 - 358)565 (81 - 645)
definitionCHROMAT_FILE: MSMg01no361_p02.b1 PHD_FILE: MSMg01no361_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:08 2005CHROMAT_FILE: MSMg01no361_p02.g1 PHD_FILE: MSMg01no361_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCCTGTTTGTCTCCCAAGTGCAAGAATGTCAGGTGTGTAC
TCCCATGCCTGGTCTCTGTATGCATATTAAGTGTAGTTTTGTTATATGAG
AAAACACAGGAGACACTTGTCCTTCTGAGGTGGGGTTATTTCTCTTGATT
GATATAATAGCCTCCAGTTCTATATGTATTTTCTGGTGAAAGACATAATT
CCATTCTTCTTTGTAGACATCTTTTTTTTTTACAGTTTTTGTATAAAATT
AATTAAAAAATATTGTTAAGTTGAATTTTTCTTGCTCCAACAATAAGTAA
CCTTTGTCCAGGGATACATAAATTCAATAAAAAATGACATGTGCACACAA
TATGGAAAATTTTTAACAACCTTGAAATAGGTAAACAAGATGCCCTTTAC
AAGGCACCTTTTCAGATTAGCTCTGAGTTTCACCATATTTGAACTGGTTT
CAGGAGTCTCTAATTGATCAAGTTGATAATAGTGTAAATAATTTTTGGTC
ATACAACTGCTGATTATGTCTGGATTTGTAAGAGTTTGCTGTCCCTGCAC
AAGTGAATGATTCTGCATCTATTTTTCTTTTTTTTGTTTCCCTTCACCGT
TTTTCCCGTACTGCTGTTCTCTTTCCTCGCCATTCTGCCCTTTTCTTCTG
TTCGCCTCCTTTCCCCTTTCTTTCTTGTCTTTTCACTTTT
TTTTTCGATGATAGTGCGTAGGCCTGGACGACGCCGGTTCGACAAGGXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGGGGAAAAGCAGCTGT
CCCACTTGAAGGCATGGTTGGTCCAGTGTAGGAGTTCAGCTCTATTTCCC
ACTGATCCAAAAATATTGAACAACACATAGATGTATATGCAAATTATCTA
GGGCCAGAGAATGGGGTAGAGCTTCACACTCTCTCTAACACAGCTGCATG
ACCCTAGCATCTGCCAGTGACAACTCCCCAGCGTGGAACCTCAGTACCGA
GTAGCTACCCTGCCATAGGCTGCGGTGATGCCTTCTAGCCTTGAGTGTCT
ATTCTAAAGAGCGTGTTCAGCTCCCAAATGTGTATGTATGGTTGGAGTAA
CTCAGAACTGGTTGAGACCTGTAGCATTGTGCCCTTAAGCTGTAAAGTCC
CTACCCAGGGGCATGCATTTTCTGGTCCCTTTATCAGGTGGAGGTAGAGG
CTTATGTTTTTTCACTAGAGTAATATCATGTCCCTCTTGAACCCAGTCTC
TCAGGCCTAGCCCTTTAGGTGAGTCAACTGACTTGTTCCACACTAGGAAG
AAGCTGCATTCACCAACCACATCAGTGTTCATGGACCCATTCTTCATCAG
GAACAAGTTCTTAGTGTGCAATCTCAAGGACCTGACACTTGGGGTTGAGA
GCCATTCCAGTCCCTCCTGTCTTTTTTGTACCTCCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_p02.g1 MSMg01no361_p02.g1 CHROMAT_FILE:
MSMg01no361_p02.g1 PHD_FILE: MSMg01no361_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:08 2005
         (565 letters)



>mm_chr13_32791607_32792571
          Length = 965

 Score =  984 bits (509), Expect = 0.0
 Identities = 543/559 (97%), Gaps = 10/559 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaaaagcagctgtcccacttgaaggcatggttggtccagtgtaggagttcagctctattt 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 gaaaagcagctgtcccacttgaaggcatggttggtccagtgtaggagttcagctctattt 906

                                                                       
Query: 68  cccactgatccaaaaatattgaacaacacatagatgtatatgcaaattatctagggccag 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 cccactgatccaaaaatattgaacaacacatagatgtatatgcaaattatctagggccag 846

                                                                       
Query: 128 agaatggggtagagc-ttcacactctctctaacacagctgcatgaccctagcatctgcca 186
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 agaatggggtagagctttc-cactctctctaacacagctgcatgaccctagcatctgcca 787

                                                                       
Query: 187 gtgacaactccccagcgtggaacctcagtaccgagtagctaccctgccataggctgcggt 246
           |||||||||||||||||||||        |||||||||||||||||||||||||||||||
Sbjct: 786 gtgacaactccccagcgtgga--------accgagtagctaccctgccataggctgcggt 735

                                                                       
Query: 247 gatgccttctagccttgagtgtctattctaaagagcgtgttcagctcccaaatgtgtatg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gatgccttctagccttgagtgtctattctaaagagcgtgttcagctcccaaatgtgtatg 675

                                                                       
Query: 307 tatggttggagtaactcagaactggttgagacctgtagcattgtgcccttaagctgtaaa 366
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 674 catggttggagtaactcagaactggttgagacctgtagcattgtgcccttaagctgtgaa 615

                                                                       
Query: 367 gtccctacccaggggcatgcattttctggtccctttatcaggtggaggtagaggcttatg 426
           |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 614 gtccatacccaggggcatgcattttctggtccctttatcaggtggaagtagaggcttatg 555

                                                                       
Query: 427 ttttttcactagagtaatatcatgtccctcttgaacccagtctctcaggcctagcccttt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttttttcactagagtaatatcatgtccctcttgaacccagtctctcaggcctagcccttt 495

                                                                       
Query: 487 aggtgagtcaactgacttgttccacactaggaagaagctgcattcaccaaccacatcagt 546
           ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 494 aggtgagtcaactgacttgtttcacacaaggaagaagctgcattcaccaaccacatcagt 435

                              
Query: 547 gttcatggacccattcttc 565
           |||||||||||||||||||
Sbjct: 434 gttcatggacccattcttc 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)