BAC Information

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BAC

Clone NameMSMg01-362B20
Chromosome13 (Build37)
Map Location 84,131,210 - 84,131,659
singlet/doubletsinglet
Overlap genenone
Upstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119
Downstream geneLOC667081, LOC667101, Tmem161b, LOC666795, LOC667111, LOC382786, LOC100042841
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362B20.T7 (MSMg01no362_b20.b1)MSMg01-362B20.TJ (MSMg01no362_b20.g1)
ACCAG470878AG470879
length770764
length of high quality
(start - end)		457 (49 - 505)479 (79 - 557)
definitionCHROMAT_FILE: MSMg01no362_b20.b1 PHD_FILE: MSMg01no362_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:21 2005CHROMAT_FILE: MSMg01no362_b20.g1 PHD_FILE: MSMg01no362_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGAATTGAGCCAATAAACTTTAGTAGAACTTACAAGGATCTA
TGTGATGTGACCAGTGCTTACTGTGGTGGTTTAAGTAAGAAACATCCCCC
ATAGTCTCAACAACAAGACACAGGGAAATCTGGGTAACGAAGTCCAAAAC
AACCCAACAATATGTACCTCAAAGGAGTGCTGTTGGTTTCCTAATCCAGT
ACACCACGTGTATCAGAAACTTCTGAATTAGACACATTAGCCGAAGGCAG
AAGTGATCAACACAGTTACTCAAGCTACAGAAGATATTTGCTTAGTTGTT
TTGTTTACATAGAAGCTGAAAACAGAAAATACATTTCTCTTTTCATTTTG
TCTTCAAATATTCTTATTCTTCGAGAGTATATTTTGACCCATTTCACTCT
ACCCATTTAGCTTCCCACAGATCCACCACTTTTCACTTTTGTATCCTTTT
CTATTTTTTTTTGTAACTAACCTTTCTAGACAAATTTAATAGTAGATTTT
TAAAGCCTTATGAACACTTTTATGCTTCCATGACTTATGTATTTTTTTCA
CAACTCATTTTTGCCCGGATAACTACTTTATTTTTCTCTTGATTATTTGT
TTATTTTACGGTTCTTATCTTTAACCTTTTCCATTTTTATTTCCAATCCC
CCACTACTTTTTTGAATCATTTAAAATCCCCCCCTTTCTTTTTTTCTATA
GTTATAAAAATCTCTGTGGG

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGAAGAGGAGGCAGAATTT
ATAAGAGACAGAGGATATAGAGTTCACCATGAAAACAAGGCCCCCCCTCA
TCAAATTAATCAAAGATCATAAGAACTCAGAGAGACTGAGGTTATCCTCA
TAGGATCTATACCAGGTCCTCTGTATATATTATAGATTCTAGTTTATCAT
TTTTATGGGATTAGTGAGTGTACTGGCTAGTTTTGTGTCAACTTGACAGA
AGCTGGAGTGATCACAGAGAAAGGAGCTCCAGTTGAGGAAATGCCTCCAC
GAGATCTAGCTGTAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGC
CCCTTGTGCACATCTCTAGGCTGGTTGTTTTGGGTTCTATAAGAGAGCAG
TCTGTGTTTGCTAGGCCCCGGCCTAGTCTAACAAGAGACAGCTATATCAC
GGTCCTTGCAACAAACGCTTGCTAGTGTATGCAATGGTGTCATCGTTTGG
AGGCTAATTATGGGATGGATCCCTGGATATGGCAGCCTTTAGATGGCCCA
TCCCTTTTTCTCAGCTCAAGGCCAACTATTTGGAAGGATTACAAGGTCCT
CCAAGGGGGGAGTTGAATAAGGTTTCTTGGGTCTTATGAATATCTTCACC
CTCTTGGTGGGAATATTTTTATGAATATACTACAACCTCAAATTTATCTG
ACTTCAGCGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_b20.b1 MSMg01no362_b20.b1 CHROMAT_FILE:
MSMg01no362_b20.b1 PHD_FILE: MSMg01no362_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:21 2005
         (457 letters)



>mm_chr13_84130898_84131754
          Length = 857

 Score =  783 bits (405), Expect = 0.0
 Identities = 440/453 (97%), Gaps = 3/453 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagaattgagccaataaactttagtagaacttacaaggatctatgtgatgtgacc 64
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 762 gaattcagaattgagccaataatctttagtagaacttacaaggatctatgtgatgtgacc 703

                                                                       
Query: 65  agtgcttactgtggtggtttaagtaagaaacatcccccatagtctcaacaacaagacaca 124
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 702 agtgcttactgtggtggtttaagtaagaaacatcccccatagtct---caacaagacaca 646

                                                                       
Query: 125 gggaaatctgggtaacgaagtccaaaacaacccaacaatatgtacctcaaaggagtgctg 184
           ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 645 gggaaatctgggtaatgaagtccaaaacaatccaacaatatgtacctcaaaggagtgctg 586

                                                                       
Query: 185 ttggtttcctaatccagtacaccacgtgtatcagaaacttctgaattagacacattagcc 244
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttggtttcataatccagtacaccacgtgtatcagaaacttctgaattagacacattagcc 526

                                                                       
Query: 245 gaaggcagaagtgatcaacacagttactcaagctacagaagatatttgcttagttgtttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaaggcagaagtgatcaacacagttactcaagctacagaagatatttgcttagttgtttt 466

                                                                       
Query: 305 gtttacatagaagctgaaaacagaaaatacatttctcttttcattttgtcttcaaatatt 364
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 465 gtttacatagaagctgaaaacagaaaatacatttctcttttcgttttgttttcaaatatt 406

                                                                       
Query: 365 cttattcttcgagagtatattttgacccatttcactctacccatttagcttcccacagat 424
           ||||||| | |||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 405 cttattcctagagagtatattttgacccttttcactctacccatctagcttcccacagat 346

                                            
Query: 425 ccaccacttttcacttttgtatccttttctatt 457
           |||||||||||||||||||||||||||||||||
Sbjct: 345 ccaccacttttcacttttgtatccttttctatt 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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