BAC Information

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BAC

Clone NameMSMg01-362P06
Chromosome13 (Build37)
Map Location 83,339,908 - 83,340,217
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC238756, LOC667018
Downstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362P06.T7 (MSMg01no362_p06.b1)MSMg01-362P06.TJ (MSMg01no362_p06.g1)
ACCAG471514AG471515
length799807
length of high quality
(start - end)
314 (43 - 356)285 (74 - 358)
definitionCHROMAT_FILE: MSMg01no362_p06.b1 PHD_FILE: MSMg01no362_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:30 2005CHROMAT_FILE: MSMg01no362_p06.g1 PHD_FILE: MSMg01no362_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTGGGCTCAGGAAGAAATTGCTTCTTAGTGGTAGCTATTAATCTCTT
GTGACTTTGCCTCCTGCTGTTTGGGCCTATACTTTCACTTTTTTTTCTGG
GAAATTAAGTTTTAAAAATGCTATTCCCTTTTTTTTTTTAATGCATTCAA
GGGAATTCAACTTTTGAAATCAAATATTCTGAAGTCAGACTCACTATTCT
GCTAGATTCCATTTCAGTGGCCAAGGTGAGAGAAGTTACCTGCATGTCCT
CTGGTTCCTTCATCTGAAAAAAATGAGCTTTCATGATTAACATTGTTGAA
AATGGGGATTGGGGTTCATGTAATAGATTAATGTAATTATCCATTTGATA
ATGTGTTCCTGCCCCTTGATTTTTTTCTATACTCTTATTCCCTTTTTCTC
TTCTTTCTATTCCTCACCCTTTTTTCCATTTTTATTCCTTTTTCTCCCCC
TCCTTCCCCACGTTTCTCTCCCTCCCTTTTTTCCCTCTTCTTCCCCCCCC
TCACTTTTTCCTCTCCCCTTTCTTCCCCCTCTTCTTTCCCTTTTCTCTCT
CACTCTTCTTCTTTTTTTTTTCTCCCCCCCTCCTTTTATCCTCCCCCTTA
TTCTTTATCTTTTTCCTTTTTATTTTCTTTTACCCTACACCCCCCTTACT
CCACCCTTTTTTCTCTACACCTTCCCCACACATCAATCTTCATCTTCTCT
TCCTTATCCACTCCTTTTCTACTTCCCTTTATTTTTTCTCCGTTCTCAG
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCCCCTGAATTAGGAAACAGGCCATA
GAGCCTACAATTTCCCTACAATGAAACCTTAAGAAGCCATTTTGTGAAGC
TGTGACAGTGGGGTCTAAGTTGCGGTAGGGTCAAAAAGCTGTGGAAGATT
CCAGTGCTATTAAATATTTGCCAAGTAGACCTGCACACAAGGAATGGAAA
CAACTCAATACATATATGTATGTTGCAAGCAGAAACCCTGGGGGAGGGTC
AATATCATCTAAGCTCCCAAATACCAGATAAAGGGAACATATGTTGATGA
TTTCTCGCCTGGATCTTGGACTTGTTTTGAGTCATGAGGCCATGCCAGTG
CCTGTTATATATTGAAGTGCATGCTCTCTGTCATCTGTATGATGTAACAT
GTTACCTCTCTTGCACAACCTAGAGAATGTATCCATTGCGTCTGAATGTG
TCTTGTTACCTCCCCTTTTGTCTTTTCTCTTCCCCCTTTTTTCTCCCTCC
TCCTCTTATCTATTTGCCCTCATCCCTCATTCTATTTCACTACTATCCTC
CCTCTTCCTTTTACCTTTTCTCCCCCATATTTTCCCTATTTCTCCCTCCC
CTCTTTTACTTTTCCTCCTCTTCCTCCCTCTCCCTCTTTCCTCTTTTCCC
CCTCTCCTCCCCTTTCCCTCTTCCTTTCTCCCCCCTCTCTATCTTTATTT
TTCTCCCCATCCTCCCCCCCCTCTCCCTATTTTCCTCCCCTTCTTCCCCC
CTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_p06.b1 MSMg01no362_p06.b1 CHROMAT_FILE:
MSMg01no362_p06.b1 PHD_FILE: MSMg01no362_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:30 2005
         (314 letters)



>mm_chr13_83339704_83340417
          Length = 714

 Score =  571 bits (295), Expect = e-167
 Identities = 307/311 (98%), Gaps = 2/311 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgggctcaggaagaaattgcttcttagtggtagctattaatctcttgtgact 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcagtgggcacaggaagaaattgcttcttagtggtagctattaatctcttgtgact 455

                                                                       
Query: 65  ttgcctcctgctgtttgggcctatactttcactttttttt-ctgggaaattaagttttaa 123
           |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 454 ttgcctcctgctgtttggacctatactttcacttttttttcctgggaaattaagttttaa 395

                                                                       
Query: 124 aaatgctattccctttttttttttaatgcattcaagggaattcaacttttgaaatcaaat 183
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aaatgctattccc-ttttttttttaatgcattcaagggaattcaacttttgaaatcaaat 336

                                                                       
Query: 184 attctgaagtcagactcactattctgctagattccatttcagtggccaaggtgagagaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 attctgaagtcagactcactattctgctagattccatttcagtggccaaggtgagagaag 276

                                                                       
Query: 244 ttacctgcatgtcctctggttccttcatctgaaaaaaatgagctttcatgattaacattg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttacctgcatgtcctctggttccttcatctgaaaaaaatgagctttcatgattaacattg 216

                      
Query: 304 ttgaaaatggg 314
           |||||||||||
Sbjct: 215 ttgaaaatggg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)