BAC Information

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BAC

Clone NameMSMg01-363L04
Chromosome13 (Build37)
Map Location 113,296,465 - 113,474,460
singlet/doubletdoublet
Overlap geneIl6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik
Upstream geneLOC100040666, Mier3, Map3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725
Downstream genePpap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363L04.T7 (MSMg01no363_l04.b1)MSMg01-363L04.TJ (MSMg01no363_l04.g1)
ACCAG472072AG472073
length741767
length of high quality
(start - end)		590 (41 - 630)534 (79 - 612)
definitionCHROMAT_FILE: MSMg01no363_l04.b1 PHD_FILE: MSMg01no363_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:29 2005CHROMAT_FILE: MSMg01no363_l04.g1 PHD_FILE: MSMg01no363_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,296,465 - 113,297,050)(113,473,928 - 113,474,460)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACACTACAATGCTGGCACCATTGCCATTCAAGTTGGACGTCAAAGCCTGA
TCCCAGTTAGGACTGAGTTTTCTATGTATATATCTGCCAGGAAGTTAACA
CTTGCTGAATTTCTCATCTTCTCACAGTAAGCAGTCTAGTTATGGGACTC
TATCCATGTTCAGCTGTGACTTCCCTCATATCAGACAGTGGTGCTGTGAA
CGTTGCAGTGTGAAGTCTGTACTGGCTAGGGATGGTAACCCAGCGTGAGT
TCAGGCATGAACATAGAGGCCACTGAAGGAAGAGCCTCCTGGCATCAAGT
TGGCACGTTAAATCCCAGACAGAAAGTGTCCCAGGGAGCCAGGGCCTCCG
CCAGCAGGGAGGGGGTGTGCTCACTGCAGGAACGTTCATTTAGAAGATGT
ACCATGGAGCACCTCCCTTTGCTCTAAGAGAAAACCCATCTTAAAGTTCA
TCTTGAATACAGACTTCGCTCGAGCATGTTTTAGAATAATCTGGATGCTG
TACCTTGTACCTTAGGTAGCAGAGAAAGTAATCTGGCGTCTTTCTGTAAA
ACCGTCTAATAAAGCTAGTTCTGCCCGTGGGCTCGTATTCTTTCGTGTGT
AAAAATGTAGTGTAAGGCGCACCAGAGAGCAGCCTGGCTTGTGGGCAGGG
CTAGTCCACTGCTTCTCATGCAGTTGCCTCTCGAGGACTCN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAACGGCATTAACATCTAACCAC
TAGGTTGGTTTGAAGGTCTGCTGCAAAGCAGTCCGGGAAGTGTTAGGCCT
TGGCTCCTGCCTCTGGCTGGCGCGTTAACTGTACCAGTTTAGTTGGCTTG
GGTACTCTGAGAACAGAATGGCTTTGAAAGCTTTTCTTTTCCAACCGTTT
TCATCGAGATGTTGAGTGCCTGTTCAAACAAATATTTTGGAATTTTTTCA
AAACAGATTCTCTTTAAAAATATATTATTCAGCATATTTTTGGTGAATTA
TTAGAAACACATTTTAGAAAGTGAAAATATGAACTTTACTTAAAACACTT
TAAAAATGAAGAACACTACATAGAGGATAATGTTCAGGGTAAAAGACTCA
AGAGCTTTTATCTTTGAACTCTCTTTCAATTGTGCCTATCAGGGTCACTT
GCCATTTGACACGCAGTTCAGCTGTACCCAATGAGAACAAAGAGGGCATA
TCTGTCTCACCTTGTAAATAGTTAAGCTCATGCCAAAGCAAGAGTGTTTT
AATTTGGAGCATAATTTACCACATATTTTAAAATGTGATTCCATTCTCAT
ATATTCCTTTAATGCCCACCTAAACAACGAACCCCCCTCCCGCTAACACC
TTTTTTAAGTGGACCCCTTTAATTCCCTAAAAACTTTTTGGCTTTTCAAC
CTTGTCCCACCCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_l04.b1 MSMg01no363_l04.b1 CHROMAT_FILE:
MSMg01no363_l04.b1 PHD_FILE: MSMg01no363_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:29 2005
         (590 letters)



>mm_chr13_113296261_113297250
          Length = 990

 Score = 1102 bits (570), Expect = 0.0
 Identities = 582/586 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacactacaatgctggcaccattgccattcaagttggacgtcaaagcctgatccc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacactacaaggctggcaccattgccattcaagttggacgtcaaagcctgatccc 264

                                                                       
Query: 65  agttaggactgagttttctatgtatatatctgccaggaagttaacacttgctgaatttct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agttaggactgagttttctatgtatatatctgccaggaagttaacacttgctgaatttct 324

                                                                       
Query: 125 catcttctcacagtaagcagtctagttatgggactctatccatgttcagctgtgacttcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catcttctcacagtaagcagtctagttatgggactctatccatgttcagctgtgacttcc 384

                                                                       
Query: 185 ctcatatcagacagtggtgctgtgaacgttgcagtgtgaagtctgtactggctagggatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcatatcagacagtggtgctgtgaacgttgcagtgtgaagtctgtactggctagggatg 444

                                                                       
Query: 245 gtaacccagcgtgagttcaggcatgaacatagaggccactgaaggaagagcctcctggca 304
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 gtagcccagcgtgagttcaggcatgaacatagaggccactgaaggaagagcctcctggaa 504

                                                                       
Query: 305 tcaagttggcacgttaaatcccagacagaaagtgtcccagggagccagggcctccgccag 364
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcaagttggcacgttaaatcccagacagaaagtgtcccagggagccagggcctccgccag 564

                                                                       
Query: 365 cagggagggggtgtgctcactgcaggaacgttcatttagaagatgtaccatggagcacct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagggagggggtgtgctcactgcaggaacgttcatttagaagatgtaccatggagcacct 624

                                                                       
Query: 425 ccctttgctctaagagaaaacccatcttaaagttcatcttgaatacagacttcgctcgag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccctttgctctaagagaaaacccatcttaaagttcatcttgaatacagacttcgctcgag 684

                                                                       
Query: 485 catgttttagaataatctggatgctgtaccttgtaccttaggtagcagagaaagtaatct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 catgttttagaataatctggatgctgtaccttgtaccttaggtagcagagaaagtaatct 744

                                                         
Query: 545 ggcgtctttctgtaaaaccgtctaataaagctagttctgcccgtgg 590
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggcgtctttctgtaaaaccgtctaataaagctagttctgcccgtgg 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no363_l04.g1 MSMg01no363_l04.g1 CHROMAT_FILE:
MSMg01no363_l04.g1 PHD_FILE: MSMg01no363_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:30 2005
         (534 letters)



>mm_chr13_113473728_113474661
          Length = 934

 Score = 1015 bits (525), Expect = 0.0
 Identities = 531/533 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacggcattaacatctaaccactaggttggtttgaaggtctgctgcaaagcagtccggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aacggcattaacatctaaccactaggttggtttgaaggtctgctgcaaagcagtccggga 674

                                                                       
Query: 61  agtgttaggccttggctcctgcctctggctggcgcgttaactgtaccagtttagttggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 agtgttaggccttggctcctgcctctggctggcgcgttaactgtaccagtttagttggct 614

                                                                       
Query: 121 tgggtactctgagaacagaatggctttgaaagcttttcttttccaaccgttttcatcgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgggtactctgagaacagaatggctttgaaagcttttcttttccaaccgttttcatcgag 554

                                                                       
Query: 181 atgttgagtgcctgttcaaacaaatattttggaattttttcaaaacagattctctttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 atgttgagtgcctgttcaaacaaatattttggaattttttcaaaacagattctctttaaa 494

                                                                       
Query: 241 aatatattattcagcatatttttggtgaattattagaaacacattttagaaagtgaaaat 300
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aatatacaattcagcatatttttggtgaattattagaaacacattttagaaagtgaaaat 434

                                                                       
Query: 301 atgaactttacttaaaacactttaaaaatgaagaacactacatagaggataatgttcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atgaactttacttaaaacactttaaaaatgaagaacactacatagaggataatgttcagg 374

                                                                       
Query: 361 gtaaaagactcaagagcttttatctttgaactctctttcaattgtgcctatcagggtcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtaaaagactcaagagcttttatctttgaactctctttcaattgtgcctatcagggtcac 314

                                                                       
Query: 421 ttgccatttgacacgcagttcagctgtacccaatgagaacaaagagggcatatctgtctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttgccatttgacacgcagttcagctgtacccaatgagaacaaagagggcatatctgtctc 254

                                                                
Query: 481 accttgtaaatagttaagctcatgccaaagcaagagtgttttaatttggagca 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 accttgtaaatagttaagctcatgccaaagcaagagtgttttaatttggagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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