Query= MSMg01no363_p04.b1 MSMg01no363_p04.b1 CHROMAT_FILE:
MSMg01no363_p04.b1 PHD_FILE: MSMg01no363_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:50 2005
(600 letters)
>mm_chr13_3674692_3675693
Length = 1002
Score = 1145 bits (592), Expect = 0.0
Identities = 596/598 (99%), Gaps = 2/598 (0%)
Strand = Plus / Minus
Query: 5 gaattccacatacctaacccaccctaaactcagtattttggttagatgtgttttgtacca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gaattccacatacctaacccaccctaaactcagtattttggttagatgtgttttgtacca 743
Query: 65 cctcatcactaggcctgtggttttctaaggcctcctccctgcctctgttccatcgggttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cctcatcactaggcctgtggttttctaaggcctcctccctgcctctgttccatcgggttc 683
Query: 125 ttctttccccagtggcatatattgcttagagccaaaacaaatatcgaaaactggaacaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttctttccccagtggcatatattgcttagagccaaaacaaatatcgaaaactggaacaga 623
Query: 185 acagggcttttccaagggaggggctgcctgataccgtttcctctacagtctctatcctaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 acagggcttttccaagggaggggctgcctgataccgtttcctctacagtctctatcctaa 563
Query: 245 ctccattttcatgttagctgcacaccccagctggactaaggccattcccctaagtgcctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctccattttcatgttagctgcacaccccagctggactaaggccattcccctaagtgcctc 503
Query: 305 gctgtgaagatgttcaagtttctttagattggcagcaaaaagggggcattgtagcattgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gctgtgaagatgttcaagtttctttagattggcagcaaaaagggggcattgtagcattgg 443
Query: 365 aaaatactgtatttaatctacctcaaactacagagcaccatgatccacaggctcagagaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaaatactgtatttaatctacctcaaactacagagcaccatgatccacaggctcagagaa 383
Query: 425 atcaatccttctgcctgccctgccatctcaaatgtgagcctctctgctctatggcaggat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atcaatccttctgcctgccctgccatctcaaatgtgagcctctctgctctatggcaggat 323
Query: 485 gcaag--aaaaaaaaaaaagagtaaggaagaccccaagctggacatggttaaccatgcag 542
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gcaagaaaaaaaaaaaaaagagtaaggaagaccccaagctggacatggttaaccatgcag 263
Query: 543 gggtcaagcacatactctgatttcctcaatcaaatgtgtttgcttcagtgtcgtggag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gggtcaagcacatactctgatttcctcaatcaaatgtgtttgcttcagtgtcgtggag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1002
Length adjustment: 10
Effective length of query: 590
Effective length of database: 992
Effective search space: 585280
Effective search space used: 585280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_p04.g1 MSMg01no363_p04.g1 CHROMAT_FILE:
MSMg01no363_p04.g1 PHD_FILE: MSMg01no363_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:50 2005
(562 letters)
>mm_chr13_3641704_3642667
Length = 964
Score = 1064 bits (550), Expect = 0.0
Identities = 560/564 (99%), Gaps = 2/564 (0%)
Strand = Plus / Plus
Query: 1 ctgtgtaggtttaacaaacagagttcttacctccaggatatacagtgtgagatgctgaca 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 ctgtgtaggtttaacaaacagagttcttaactccaggatatacagtgtgagatgctgaca 260
Query: 61 taacctctggggtgaggcagagaaaataagttaacaaaacaaacttctgacctggctgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacctctggggtgaggcagagaaaataagttaacaaaacaaacttctgacctggctgcc 320
Query: 121 cttgccagtgtgcacattcacagcacaggtagattttgctgctggtggtttccattctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgccagtgtgcacattcacagcacaggtagattttgctgctggtggtttccattctgc 380
Query: 181 aggttatctgcctgcttagcagagctggcgacatcttcgctgtcccatgtgcctatggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggttatctgcctgcttagcagagctggcgacatcttcgctgtcccatgtgcctatggag 440
Query: 241 aacacaggactctggtctctgagctcaccatgtgagggcagagtgaacacagcacaccat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacacaggactctggtctctgagctcaccatgtgagggcagagtgaacacagcacaccat 500
Query: 301 gtaccctcccccgaagcttgggatggaacaaatgtcacagttttcattgtgaacccacag 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtacccttccccgaagcttgggatggaacaaatgtcacagttttcattgtgaacccacag 560
Query: 361 aagcctaacttggataaattctaagtgtgtctttccagtttagggcgttggcttcttcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagcctaacttggataaattctaagtgtgtctttccagtttagggcgttggcttcttcct 620
Query: 421 ggcctatggttttccatg--aagcagtctctaacattttcttttagtcaaagctcaactt 478
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcctatggttttccatgctaagcagtctctaacattttcttttagtcaaagctcaactt 680
Query: 479 aaaatccatcttgaatcttgcttccccaacctcaggctctcctttctgccctatgtttac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaatccatcttgaatcttgcttccccaacctcaggctctcctttctgccctatgtttac 740
Query: 539 tatttgcttggggatggtagtgag 562
||||||||||||||||||||||||
Sbjct: 741 tatttgcttggggatggtagtgag 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 964
Length adjustment: 10
Effective length of query: 552
Effective length of database: 954
Effective search space: 526608
Effective search space used: 526608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
