BAC Information

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BAC

Clone NameMSMg01-365E01
Chromosome13 (Build37)
Map Location 109,413,188 - 109,592,779
singlet/doubletdoublet
Overlap genePde4d, EG668144, LOC621663
Upstream geneZswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b
Downstream geneLOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365E01.T7 (MSMg01no365_e01.b1)MSMg01-365E01.TJ (MSMg01no365_e01.g1)
ACCAG473253AG473254
length749724
length of high quality
(start - end)		461 (44 - 504)546 (58 - 603)
definitionCHROMAT_FILE: MSMg01no365_e01.b1 PHD_FILE: MSMg01no365_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:42 2005CHROMAT_FILE: MSMg01no365_e01.g1 PHD_FILE: MSMg01no365_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,413,188 - 109,413,638)(109,592,234 - 109,592,779)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTACTCTGCATTTTTTTTTCTATGCAGAGGTTGGGAGGCGAGTTAGC
TCTCAGGGATAGTGGGAGGTGCTCTAAATTCTACCTGCATTCACAAAGCA
GTGTGAGAAAAAGAGACTCCTCTGCCTCAATTGCTCGTGTCTGATGTAAA
CTCCCGAATAACTTTTATCTCAGCATCTTCAGGCACAGCTTACAACTACA
GCACCAGCCCCATATCAATGTTATTTTCTAGCTTAGTTTAAACAAGTAGA
ACACATAGAAAACTTTGTGTGGCTAGCAGTGGATGTTTTAAGACTTGGAC
GCATAGACCCAGAAGGAACCCAATGTAATCAGAGAAGGGCAGCCAACTGG
ATAGAGAAGCTGGGACCAGACTTTCCTTGGGTAATTGGAAATGTGAGAAA
TGTCAACTGGGCTTCTCACACAGTAAAGAGGAAGAAAAGGAGGGAGGGAG
GGCAGTAGTAGGGCAAAGCACGGGAGAAAAGTAACATAGCTGACTGAAGG
AGTGAATGACGCCATGTCCATTTTGGAGTGCAGGTCCTAACAAAGTAATA
TATTTTAGGTTGGCTTTGGGAGATGCTAGTTCTAGGAAACTACGGCCCAT
ATATTCATAAAGTTGCGCGCTTTATTAACAACGTTTTTTGCTTAATAAAA
TTATTACATCATCTTTCTGCGCGAGCCATTTTGGCAACAGTTTTTCCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAATCAATCAATTAAGAAATGTAAAAAACAAAACAAAACAAAAC
ATTTTTTTCAAGACGTTTATCTTGAATTTGACACTTCATATACAAAGGGA
CTCTACAGGATATACAGATGTAAGTTGTTTCAATTAAAGCGGGTCTAAGC
CAATGTTACAAGAAGTTCAGGGGCACTAAGACACAGTGAAATACTGTGGA
AAGTGCTCTAAAATAGCAGCTGATACTGAGCAGCACTCTTGATATCGTAG
TTGGCTCTGTTCTTATAAGACAATAATTCTGTTTCTGGCAAAGGTGTGAG
CAAGGTTATTCTAAACCTTTAGAGCTGAGGAATAATCTTATTTTCTTGCA
ACTTTCAATCCTTTAAATCTCTGGTCAATGCTCCCTGGGCTTCTGAGAGG
ATAAGCAATCAGTCTTTCCGCACCGCTGTTTTGCCTGAGTGCAAAATGCT
GAATCTCTAGTCCTTAGTCTCTGTATCTCTAGTTCTTAGTCTCCGCATCT
CTAGTCCTTAGTCTCTGCATCTCTAGTCCTTAGTCTCTGCATCTCTAGTC
CTCAGTCTCTGCATCTCTAGTTCTCAGTCTCTGCATCTCTAGGCCTCAGT
CTCTGCATCTCTAGGCCTCAAGCTCTGCATCTCTAGTCCTCAGTCTATGC
ATCTCTAGTCCTTAGTCTCTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_e01.b1 MSMg01no365_e01.b1 CHROMAT_FILE:
MSMg01no365_e01.b1 PHD_FILE: MSMg01no365_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:42 2005
         (461 letters)



>mm_chr13_109412980_109413838
          Length = 859

 Score =  764 bits (395), Expect = 0.0
 Identities = 438/453 (96%), Gaps = 2/453 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   tcttactctgcatttttttttctatgcagaggttgggaggcgagttagctctcagggata 68
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 209 tcttactctgcatttttttttctttgcagaggttgggaggcgagttagctctcagggata 268

                                                                       
Query: 69  gtgggaggtgctctaaattctacctgcattcacaaagcagtgtgagaaaaagagactcct 128
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gtgggaggtgctctaaatcctacctgcattcacaaagcagtgtgagaaaaagagactcct 328

                                                                       
Query: 129 ctgcctcaattgctcgtgtctgatgtaaactcccgaataacttttatctcagcatcttca 188
           |||||||||||||||  ||||||| |||||||| |||||||||||||||| |||||||||
Sbjct: 329 ctgcctcaattgctc--gtctgatataaactcctgaataacttttatctcggcatcttca 386

                                                                       
Query: 189 ggcacagcttacaactacagcaccagccccatatcaatgttattttctagcttagtttaa 248
           |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 387 ggcacagcctacaactacagcaccagccccatatcaatgttatttgctagcttagtttaa 446

                                                                       
Query: 249 acaagtagaacacatagaaaactttgtgtggctagcagtggatgttttaagacttggacg 308
           ||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 447 acaagcagaacacatagaatactttgtgtggctagcagtggacgttttaagacttggacg 506

                                                                       
Query: 309 catagacccagaaggaacccaatgtaatcagagaagggcagccaactggatagagaagct 368
           ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 507 catggacccagaaggaacccaatgtaatcagagtagggcagccaactggatagagaagct 566

                                                                       
Query: 369 gggaccagactttccttgggtaattggaaatgtgagaaatgtcaactgggcttctcacac 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gggaccagactttccttgggtaattggaaatgtgagaaatgtcaactgggcttctcacac 626

                                            
Query: 429 agtaaagaggaagaaaaggagggagggagggca 461
           |||||||||| ||||||||||||||||||||||
Sbjct: 627 agtaaagagggagaaaaggagggagggagggca 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 859
Length adjustment: 10
Effective length of query: 451
Effective length of database: 849
Effective search space:   382899
Effective search space used:   382899
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no365_e01.g1 MSMg01no365_e01.g1 CHROMAT_FILE:
MSMg01no365_e01.g1 PHD_FILE: MSMg01no365_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:42 2005
         (546 letters)



>mm_chr13_109591990_109592935
          Length = 946

 Score =  978 bits (506), Expect = 0.0
 Identities = 536/546 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcaatcaattaagaaatgtaaaaaacaaaacaaaacaaaacatttttttcaagacgtt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 aatcaatcaattcagaaatgtaaaaaacaaaacaaaacaaaacatttttttcaagacgtt 731

                                                                       
Query: 61  tatcttgaatttgacacttcatatacaaagggactctacaggatatacagatgtaagttg 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tatcttgaatttggcacttcatatacaaagggactctacaggatatacagatgtaagttg 671

                                                                       
Query: 121 tttcaattaaagcgggtctaagccaatgttacaagaagttcaggggcactaagacacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tttcaattaaagcgggtctaagccaatgttacaagaagttcaggggcactaagacacagt 611

                                                                       
Query: 181 gaaatactgtggaaagtgctctaaaatagcagctgatactgagcagcactcttgatatcg 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct: 610 gaaatactgtggaaagtgctctaaaatagcagctgattctgagcagcactcttgatatca 551

                                                                       
Query: 241 tagttggctctgttcttataagacaataattctgtttctggcaaaggtgtgagcaaggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tagttggctctgttcttataagacaataattctgtttctggcaaaggtgtgagcaaggtt 491

                                                                       
Query: 301 attctaaacctttagagctgaggaataatcttattttcttgcaactttcaatcctttaaa 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 attctaaacctttagagctaaggaataatcttattttcttgcaactttcaatcctttaaa 431

                                                                       
Query: 361 tctctggtcaatgctccctgggcttctgagaggataagcaatcagtctttccgcaccgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tctctggtcaatgctccctgggcttctgagaggataagcaatcagtctttccgcaccgct 371

                                                                       
Query: 421 gttttgcctgagtgcaaaatgctgaatctctagtccttagtctctgtatctctagttctt 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 370 gttttgcctgagtgcaaaatgctgaatctctagtccttagtctctgtatctctagtcctt 311

                                                                       
Query: 481 agtctccgcatctctagtccttagtctctgcatctctagtccttagtctctgcatctcta 540
           |||||| |||||||||||||||||||| |||||||| |||||||||||| ||||||||||
Sbjct: 310 agtctctgcatctctagtccttagtctatgcatctccagtccttagtctatgcatctcta 251

                 
Query: 541 gtcctc 546
           ||||||
Sbjct: 250 gtcctc 245


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 9
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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